PROJECT INFORMATION
GOLD Project ID
Gp0001348  
Project Name
Macrococcus caseolyticus JCSC5402  
Other Names
  
Legacy ER Project ID
11252  
Legacy GOLD ID
Gi02280, Gc00909  
NCBI BioProject Name Macrococcus caseolyticus JCSC5402
NCBI BioProject ID 20209
NCBI BioProject Accession PRJDA20209
NCBI Locus Tag
MCCL  
NCBI BioSample Accession SAMD00060930
PI Baba T
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Alejandro Rodriguez Mojica on 2018-07-09
Project Comments
  
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Juntendo University
Collaborating Institute
  
Funding Agency
  
Project Description
Bacterium associated with meat and sheep, goat and cattle milk  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Journal of bacteriology 191(4):1180-90 Complete genome sequence of Macrococcus caseolyticus strain JCSCS5402, [corrected] reflecting the ancestral genome of the human-pathogenic staphylococci.
Other Publications
  
PROJECT COMPOSITION
Study Macrococcus caseolyticus JCSC5402
Analysis Projects Macrococcus caseolyticus JCSC5402
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2-6kb, 30-40kb  
Number Of Reads
  
Read Size
  
Vector
pUC18,pCC1FOS  
GC Percent
37  
Chromosome Count
1  
Plasmid Count
8  
ORGANISM NAME
GOLD Organism ID Go0001348
Organism Name
Macrococcus caseolyticus JCSC5402  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Macrococcus  
Genus Synonyms
  
Species
Macrococcus caseolyticus  
Subspecies
  
Species Synonyms
  
Strain
JCSC5402  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 458233
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Staphylococcaceae  
NCBI Genus
Macrococcus  
NCBI Species
Macrococcus caseolyticus  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
35  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Clusters
Diseases None
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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