PROJECT NAME
GOLD Project ID
Gp0001334  
Project Name
Citrobacter rodentium ICC168  
Other Names
  
Legacy ER Project ID
11239  
Legacy GOLD ID
Gi00153, Gc01155  
NCBI BioProject Name Citrobacter rodentium ICC168
NCBI BioProject ID 34685
NCBI BioProject Accession
PRJEA34685  
NCBI Locus Tag
ROD  
NCBI BioSample Accession
  
PI Nicholas R. Thomson
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute Imperial College London
Funding Agency Wellcome Trust Sanger Institute (United Kingdom)
Project Description
wild-type strain shown to cause colonic epithelial cell hyperplasia in mice  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 192(2):525-38 The Citrobacter rodentium genome sequence reveals convergent evolution with human pathogenic Escherichia coli.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Citrobacter rodentium ICC168
Analysis Projects Citrobacter rodentium ICC168
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2 2.2kb, 2.2-4kb, 4-5Kb, 5-6Kb, 6-9Kb, 9-10kb, 15-25Kb, 25-40kb  
Number Of Reads
  
Read Size
  
Vector
pUC19, pMAQ1b_smaI  
GC Percent
55  
Chromosome Count
1  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0001334
Organism Name
Citrobacter rodentium ICC168  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Citrobacter  
Genus Synonyms
  
Species
Citrobacter rodentium  
Subspecies
  
Species Synonyms
  
Strain
ICC168  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 637910
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Citrobacter  
NCBI Species
Citrobacter rodentium  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Murine colonic hyperplasia
Known Habitats
  
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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