PROJECT INFORMATION | |
---|---|
GOLD Project ID
![]() |
Gp0001317
|
Project Name
![]() |
Chlamydia trachomatis G/9768
|
Other Names
![]() |
|
Legacy ER Project ID
![]() |
11223
|
Legacy GOLD ID
![]() |
Gc01288
|
NCBI BioProject Name | Chlamydia trachomatis G/9768 |
NCBI BioProject ID
![]() |
43145 |
NCBI BioProject Accession
![]() |
PRJNA43145 |
NCBI Locus Tag
![]() |
G9768
|
NCBI BioSample Accession
![]() |
SAMN02603693 |
PI | Rockey, Daniel |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
JGI automated process
on 2014-03-26 |
Project Comments |
|
Project Status
![]() |
Complete and Published
|
Project Relevance
![]() |
Animal Pathogen Human Pathogen Medical |
Sequencing Center
![]() |
DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
![]() |
Oregon State University
(USA)
|
Funding Agency
![]() |
U.S. Department of Energy (DOE)
(USA)
|
Project Description
![]() |
Chlamydia trachomatis G/9768 genome sequencing
|
Project Information Visibility
![]() |
Public |
PROJECT TYPE | |
Specimen
![]() |
Organism |
Nucleic Acid
![]() |
DNA |
Sequencing Strategy
![]() |
Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
![]() |
|
Database
![]() |
|
Genome Publications
![]() |
Infection and immunity
78(6):2544-53
Genome sequencing of recent clinical Chlamydia trachomatis strains identifies loci associated with tissue tropism and regions of apparent recombination.
|
Other Publications
![]() |
|
PROJECT COMPOSITION | |
Study |
Analysis of Chlamydia trachomatis strains,Oregon State Univ |
Organism |
Chlamydia trachomatis G/9768 |
Analysis Projects |
Chlamydia trachomatis G/9768 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status
![]() |
Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
![]() |
Level 6: Finished |
Sequencing Comments
![]() |
|
Sequencing Technology
(MIGS-29)
![]() |
Sanger Illumina |
Library Method
(MIGS-28)
![]() |
|
Number Of Reads
![]() |
|
Read Size
![]() |
|
Vector
![]() |
|
GC Percent |
41
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0001317 |
Organism Name |
Chlamydia trachomatis G/9768
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
CHLAMYDIAE
|
Genus |
Chlamydia
|
Genus Synonyms |
|
Species |
Chlamydia trachomatis
|
Subspecies |
|
Species Synonyms |
|
Strain |
G/9768
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
|
Type Strain |
Unknown
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
![]() |
|
NCBI Taxonomy ID |
707185 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Chlamydiae
|
NCBI Class |
Chlamydiia
|
NCBI Order |
Chlamydiales
|
NCBI Family |
Chlamydiaceae
|
NCBI Genus |
Chlamydia
|
NCBI Species |
Chlamydia trachomatis
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Unclassified
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
|
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
|
Cell Shape |
Rod-shaped
|
Motility |
Nonmotile
|
Sporulation |
|
Temperature Range |
Mesophile
|
Temperature Optimum |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Symbiotic |
Symbiotic Physical Interaction |
Endosymbiotic intracellular
|
Symbiotic Relationship |
Parasitic
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
Pneumonia Bronchitis Pharyngitis |
Known Habitats |
Host |
Metabolisms |
|
Phenotypes |
Pathogen |
Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?