PROJECT NAME
GOLD Project ID
Gp0001293  
Project Name
Roseobacter litoralis Och 149  
Other Names
  
Legacy ER Project ID
11196  
Legacy GOLD ID
Gi01452, Gc01918  
NCBI BioProject Name Roseobacter litoralis Och 149
NCBI BioProject ID 19357
NCBI BioProject Accession
PRJNA19357  
NCBI Locus Tag
RLO  
NCBI BioSample Accession
  
PI Thorsten Brinkhoff
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute ANRT (France)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Roseobacter litoralis is the type species of the genus Roseobacter and eponymous for the Roseobacter clade. R. litoralis has a complex genomic structure, including three linear and three covalently closed circular plasmids.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Information
Entrez
Database
  
Genome Publications BMC genomics 12(324):324 Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis.
Other Publications
  
PROJECT COMPOSITION
Studies Roseobacter litoralis Och 149
Analysis Projects Roseobacter litoralis Och 149
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
57  
Chromosome Count
1  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0001293
Organism Name
Roseobacter litoralis Och 149  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Roseobacter  
Genus Synonyms
  
Species
Roseobacter litoralis  
Subspecies
  
Species Synonyms
  
Strain
Och 149  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 49566  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.1135  
Exemplar Name
Roseobacter litoralis  
Taxon DOI
10.1601/tx.1135  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 391595
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Rhodobacteraceae  
NCBI Genus
Roseobacter  
NCBI Species
Roseobacter litoralis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X78312
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Metabolisms
  
Phenotypes
  
Energy Sources Photosynthetic
Phototroph

 

 

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