| PROJECT NAME | |
|---|---|
GOLD Project ID
|
Gp0001245
|
|
Project Name
|
Caminibacter mediatlanticus TB-2
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11138
|
|
Legacy GOLD ID
|
Gi01407
|
| NCBI BioProject Name | Caminibacter mediatlanticus TB-2 |
|
NCBI BioProject ID
|
19293 |
|
NCBI BioProject Accession
|
PRJNA19293 |
|
NCBI Locus Tag
|
CMTB
|
|
NCBI BioSample Accession
|
SAMN02436122 |
| PI | |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
JGI automated process
on 2014-03-26 |
| Project Comments |
|
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| PROJECT INFORMATION | |
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Marine Microbial Initiative (MMI) Carbon cycle Environmental |
|
Sequencing Center
|
J. Craig Venter Institute (JCVI)
(USA)
|
|
Collaborating Institute
|
Rutgers University
(USA)
|
|
Funding Agency
|
Gordon and Betty Moore Foundation Marine Microbiology Initiative
(USA)
|
|
Project Description
|
Obtain energy by respiratory nitrate ammonification; energy-yielding metabolism (the lithotrophic reduction of nitrate to ammonium) may be a relevant process in marine subsurface environments. Both fix CO2 via the reductive TCA cycle, a pathway that recently has been found to be widespread in organisms inhabiting geothermal marine environments. By fixing CO2 in the absence of oxygen, both these organisms are completely independent from photosynthetic processes, and therefore they are true primary producers in the deep ocean (in contrast with aerobic chemosynthetic bacteria, which ultimately depend on photosynthetically derived oxygen for their energy metabolism). Furthermore, since these organisms reduce nitrate to ammonia, which is then released into the environment, they contribute to the nitrogen cycling in the deep-sea. T. ammonificans represents one of only two species of a newly described genus within the deeply branching Phylum Aquificae, and it likely belongs to a novel Family (currently classified as Incertae sedis). The deeply branching region of the phylogenetic tree of life is poorly represented in terms of full genomes.
|
|
Project Information Visibility
|
Public
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
Information Isolation Taxonomy Entrez |
|
Database
|
|
|
Genome Publications
|
22180817
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Caminibacter mediatlanticus TB-2 |
| Analysis Projects |
Caminibacter mediatlanticus TB-2 |
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
|
Sequencing Quality
(MIGS-31)
|
Level 2: High-Quality Draft |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
27
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0001245 |
| Organism Name |
Caminibacter mediatlanticus TB-2
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-EPSILON
|
| Genus |
Caminibacter
|
| Genus Synonyms |
|
| Species |
Caminibacter mediatlanticus
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
TB-2
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
DSM 16658
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.9362
|
| Exemplar Name |
Caminibacter mediatlanticus
|
| Taxon DOI |
10.1601/tx.9362
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
391592 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Epsilonproteobacteria
|
| NCBI Order |
Nautiliales
|
| NCBI Family |
Nautiliaceae
|
| NCBI Genus |
Caminibacter
|
| NCBI Species |
Caminibacter mediatlanticus
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Hydrothermal vents
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
AY691430 |
| Synonym List |
|
| GENERAL PROPERTIES | |||||
|---|---|---|---|---|---|
| Oxygen Requirement |
Obligate anaerobe
|
||||
| Cell Shape |
Rod-shaped
|
||||
| Motility |
Motile
|
||||
| Sporulation |
Nonsporulating
|
||||
| Temperature Range |
Thermophile
|
||||
| Temperature Optimum |
55
|
||||
| Salinity |
|
||||
| pH |
|
||||
| Cell Diameter |
|
||||
| Cell Length |
|
||||
| Color |
|
||||
| Gram Staining |
Gram-
|
||||
| Biotic Relationships |
|
||||
| Symbiotic Physical Interaction |
|
||||
| Symbiotic Relationship |
|
||||
| Symbiont Name |
|
||||
| Symbiont Taxon ID |
|
||||
| Cell Arrangements |
|
||||
| Diseases |
None |
||||
| Known Habitats |
Marine Aquatic Hot spring Hydrothermal vent |
||||
| Metabolisms |
|
||||
| Phenotypes |
|
||||
| Energy Sources |
Lithotroph |
||||
| CYANOBACTERIA METADATA | |||||
| Filaments |
|
||||
| Filament Type |
|
||||
| Differentiated Cells |
|
||||
| Position Of Heterocysts |
|
||||
| Cysts |
|
||||
| Mode Of Reproduction |
|
||||
| Trichome |
|
||||
| Trichome Type |
|
||||
| Carotenoids |
|
||||
| Pigments |
|
||||
| Phage Infectivity |
|
||||
| Phage Type |
|
||||
| Restriction Enzyme |
|
||||
| Toxin Production |
|
||||
| Toxin Type |
|
||||
| Secondary Metabolites |
|
||||
| Developmental Cycle |
|
||||
| Branching |
|
||||
| Gas Vesicles |
|
||||
| Gas Vesicle Type |
|
||||
| Diagnostic Inclusion Body Information |
|
||||
| Extracellular Structures |
|
||||
| Bloom Forming |
|
||||
| Pigment Type |
|
||||
| Complementary chromatic adaptation (CCA) |
|
||||
| Medium Types |
|
||||
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
