PROJECT NAME
GOLD Project ID
Gp0001226  
Project Name
Haliangium ochraceum SMP-2, DSM 14365  
Other Names
  
Legacy ER Project ID
11118  
Legacy GOLD ID
Gi02251, Gc01135  
NCBI BioProject Name Haliangium ochraceum DSM 14365
NCBI BioProject ID 28711
NCBI BioProject Accession
PRJNA28711  
NCBI Locus Tag
Hoch  
NCBI BioSample Accession
SAMN00002596  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Marine myxobacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Database
  
Genome Publications Standards in genomic sciences 2(1):96-106 Complete genome sequence of Haliangium ochraceum type strain (SMP-2).
Other Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Haliangium ochraceum SMP-2, DSM 14365
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
6Kb, Fosmid, 454  
Number Of Reads
90757 Sanger, 689516 pyrosequencing  
Read Size
  
Vector
pMCL200, pcc1Fos, 454  
GC Percent
69  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001226
Organism Name
Haliangium ochraceum SMP-2, DSM 14365  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-DELTA  
Genus
Haliangium  
Genus Synonyms
  
Species
Haliangium ochraceum  
Subspecies
  
Species Synonyms
  
Strain
SMP-2, DSM 14365  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 14365  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3778  
Exemplar Name
Haliangium ochraceum  
Taxon DOI
10.1601/tx.3778  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 502025
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Deltaproteobacteria  
NCBI Order
Myxococcales  
NCBI Family
Kofleriaceae  
NCBI Genus
Haliangium  
NCBI Species
Haliangium ochraceum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Beach  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 302596
Genbank 16S ID AB016470
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
30 - 34  
Salinity
Halophile  
pH
  
Cell Diameter
0.5 - 0.6 um  
Cell Length
3 - 8 um  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Sea sand
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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