Studies
|
56,329 |
|
Biosamples
|
196,776 |
|
Sequencing Projects
|
525,145 |
|
Analysis Projects
|
385,404 |
| Organisms | 484,214 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0001226
|
|
Project Name
|
Haliangium ochraceum SMP-2, DSM 14365
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11118
|
|
Legacy GOLD ID
|
Gi02251, Gc01135
|
| NCBI BioProject Name | Haliangium ochraceum DSM 14365 |
|
NCBI BioProject Accession
|
PRJNA28711 |
|
NCBI Locus Tag
|
Hoch
|
|
NCBI BioSample Accession
|
SAMN00002596 |
|
Source Sample ID
|
|
| PI | Jonathan Eisen |
| Added By | JGI automated process on 2007-11-27 |
| Last Modified By | JGI automated process on 2014-03-26 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Tree of Life GEBA |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
Leibniz Institute
(Germany)
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
|
Project Description
|
Marine myxobacterium
|
| Is JGI Project |
Yes
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
10.46936/10.25585/60007482 |
| JGI Portal Download | Raw Sequence Data |
|
Genome Publications
|
Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. PubMed: 28604660 DOI: 10.1038/nbt.3886 Standards in genomic sciences: 2(1):96-106 Complete genome sequence of Haliangium ochraceum type strain (SMP-2). PubMed: 21304682 DOI: 10.4056/sigs.69.1277 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
A Genomic Encyclopedia of Bacteria and Archaea (GEBA) |
| Organism |
Haliangium ochraceum SMP-2, DSM 14365 |
| Analysis Projects |
Haliangium ochraceum SMP-2, DSM 14365 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
454 GS FLX Sanger |
|
Library Method
(MIGS-28)
|
6Kb, Fosmid, 454
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
90757 Sanger, 689516 pyrosequencing
|
|
Read Size
|
|
|
Vector
|
pMCL200, pcc1Fos, 454
|
| GC Percent |
69
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0001226 |
| Organism Name |
Haliangium ochraceum SMP-2, DSM 14365
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-DELTA
|
| Genus |
Haliangium
|
| Genus Synonyms |
|
| Species |
Haliangium ochraceum
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
SMP-2, DSM 14365
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 14365
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3778
|
| Exemplar Name |
Haliangium ochraceum
|
| Taxon DOI |
10.1601/tx.3778
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
502025 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Myxococcota
|
| NCBI Class |
|
| NCBI Order |
Haliangiales
|
| NCBI Family |
Kofleriaceae
|
| NCBI Genus |
Haliangium
|
| NCBI Species |
Haliangium ochraceum
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Marine
|
| Ecosystem Subtype |
Intertidal zone
|
| Specific Ecosystem |
Beach/Shore
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
302596 |
| Genbank 16S ID |
AB016470 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Obligate aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Sporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
Halophile
|
| pH |
|
| Cell Diameter |
0.5 - 0.6 um
|
| Cell Length |
3 - 8 um
|
| Color |
Yellow
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Sea sand |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
Chemoorganotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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