PROJECT NAME
GOLD Project ID
Gp0001222  
Project Name
Haloterrigena turkmenica VKM B-1734, DSM 5511  
Other Names
  
Legacy ER Project ID
11113  
Legacy GOLD ID
Gi02245, Gc01189  
NCBI BioProject Name Haloterrigena turkmenica DSM 5511
NCBI BioProject ID 30411
NCBI BioProject Accession
PRJNA30411  
NCBI Locus Tag
Htur  
NCBI BioSample Accession
SAMN02598471  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Halophilic soil archaeon  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database
  
Genome Publications Standards in genomic sciences 2(1):107-16 Complete genome sequence of Haloterrigena turkmenica type strain (4k).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Haloterrigena turkmenica VKM B-1734, DSM 5511
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Sanger
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 270bp; Illumina Regular LMP, 8kb, CLRS  
Number Of Reads
33433 Sanger, 394632 pyrosequencing  
Read Size
  
Vector
pMCL200  
GC Percent
64  
Chromosome Count
1  
Plasmid Count
6  
ORGANISM NAME
GOLD Organism ID Go0001222
Organism Name
Haloterrigena turkmenica VKM B-1734, DSM 5511  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-HALOBACTERIA  
Genus
Haloterrigena  
Genus Synonyms
  
Species
Haloterrigena turkmenica  
Subspecies
  
Species Synonyms
  
Strain
VKM B-1734, DSM 5511  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 5511  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.304  
Exemplar Name
Haloterrigena turkmenica  
Taxon DOI
10.1601/tx.331  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 543526
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Halobacteria  
NCBI Order
Natrialbales  
NCBI Family
Natrialbaceae  
NCBI Genus
Haloterrigena  
NCBI Species
Haloterrigena turkmenica  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 115318
Genbank 16S ID AB004878
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
Halophile  
pH
  
Cell Diameter
1.5 - 2.0 um  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Saline soil
Soil
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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