PROJECT NAME
GOLD Project ID
Gp0001221  
Project Name
Chitinophaga pinensis UQM 2034, DSM 2588  
Other Names
  
Legacy ER Project ID
11112  
Legacy GOLD ID
Gi02244, Gc01083  
NCBI BioProject Name Chitinophaga pinensis DSM 2588
NCBI BioProject ID 27951
NCBI BioProject Accession
PRJNA27951  
NCBI Locus Tag
Cpin  
NCBI BioSample Accession
SAMN00001914  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioenergy
Biotechnological
GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Chitin-degrading bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 2(1):87-95 Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034).
Other Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Chitinophaga pinensis UQM 2034, DSM 2588
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
8Kb, fosmid, 454  
Number Of Reads
91161 Sanger, 876658 pyrosequencing  
Read Size
  
Vector
pMCL200, pcc1Fos, 454  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001221
Organism Name
Chitinophaga pinensis UQM 2034, DSM 2588  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Chitinophaga  
Genus Synonyms
  
Species
Chitinophaga pinensis  
Subspecies
  
Species Synonyms
  
Strain
UQM 2034, DSM 2588  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 2588  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.8335  
Exemplar Name
Chitinophaga pinensis  
Taxon DOI
10.1601/tx.8335  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 485918
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Chitinophagia  
NCBI Order
Chitinophagales  
NCBI Family
Chitinophagaceae  
NCBI Genus
Chitinophaga  
NCBI Species
Chitinophaga pinensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Forest soil  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 121223
Genbank 16S ID AF078775
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
23 - 24  
Salinity
  
pH
7  
Cell Diameter
0.8 - 0.9 um  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Soil
Metabolisms Biomass degrader
Chitin degradation
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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