PROJECT NAME
GOLD Project ID
Gp0001208  
Project Name
Nakamurella multipartita Y-104, DSM 44233  
Other Names
  
Legacy ER Project ID
11098  
Legacy GOLD ID
Gi02230, Gc01177  
NCBI BioProject Name Nakamurella multipartita DSM 44233
NCBI BioProject ID 29537
NCBI BioProject Accession
PRJNA29537  
NCBI Locus Tag
Namu  
NCBI BioSample Accession
SAMN02598467  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Polysaccharide-accumulating bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 2(2):168-75 Complete genome sequence of Nakamurella multipartita type strain (Y-104).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Nakamurella multipartita Y-104, DSM 44233
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Sanger
Library Method (MIGS-28)
8Kb, fosmid  
Number Of Reads
118931 Sanger  
Read Size
  
Vector
pMCL200, pcc1Fos  
GC Percent
71  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001208
Organism Name
Nakamurella multipartita Y-104, DSM 44233  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nakamurella  
Genus Synonyms
  
Species
Nakamurella multipartita  
Subspecies
  
Species Synonyms
  
Strain
Y-104, DSM 44233  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 44233  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7646  
Exemplar Name
Nakamurella multipartita  
Taxon DOI
10.1601/tx.8727  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 479431
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Nakamurellales  
NCBI Family
Nakamurellaceae  
NCBI Genus
Nakamurella  
NCBI Species
Nakamurella multipartita  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 125393
Genbank 16S ID Y08541
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
25  
Salinity
  
pH
7  
Cell Diameter
0.8 - 3.0 um  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Clusters
Pairs
Singles
Diseases None
Known Habitats Bioreactor
Sludge
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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