PROJECT NAME
GOLD Project ID
Gp0001206  
Project Name
Jonesia denitrificans 55134, DSM 20603  
Other Names
  
Legacy ER Project ID
11095  
Legacy GOLD ID
Gi02227, Gc01092  
NCBI BioProject Name Jonesia denitrificans DSM 20603
NCBI BioProject ID 20833
NCBI BioProject Accession
PRJNA20833  
NCBI Locus Tag
Jden  
NCBI BioSample Accession
SAMN02598439  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Boiled ox blood isolate.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database
  
Genome Publications Standards in genomic sciences 1(3):262-9 Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Jonesia denitrificans 55134, DSM 20603
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Sanger
Library Method (MIGS-28)
8Kb, Fosmid  
Number Of Reads
35028 Sanger  
Read Size
  
Vector
pMCL200, pcc1Fos  
GC Percent
58  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001206
Organism Name
Jonesia denitrificans 55134, DSM 20603  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Jonesia  
Genus Synonyms
  
Species
Jonesia denitrificans  
Subspecies
  
Species Synonyms
  
Strain
55134, DSM 20603  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 20603  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5097  
Exemplar Name
Jonesia denitrificans  
Taxon DOI
10.1601/tx.6032  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 471856
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Jonesiaceae  
NCBI Genus
Jonesia  
NCBI Species
Jonesia denitrificans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 353216
Genbank 16S ID X83811
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
  
Temperature Optimum
37  
Salinity
  
pH
5-7  
Cell Diameter
0.3 - 0.5 um  
Cell Length
2 -3 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Bovine
Host
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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