PROJECT NAME
GOLD Project ID
Gp0001191  
Project Name
Acidimicrobium ferrooxidans ICP, DSM 10331  
Other Names
  
Legacy ER Project ID
11080  
Legacy GOLD ID
Gi02326, Gc01023  
NCBI BioProject Name Acidimicrobium ferrooxidans DSM 10331
NCBI BioProject ID 29525
NCBI BioProject Accession
PRJNA29525  
NCBI Locus Tag
Afer  
NCBI BioSample Accession
SAMN02598466  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Iron-oxidizing thermophilic bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Wikispecies
Database
  
Genome Publications Standards in genomic sciences 1(1):38-45 Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICP).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Acidimicrobium ferrooxidans ICP, DSM 10331
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
8kb, 454, Illumina  
Number Of Reads
  
Read Size
  
Vector
pMCL200  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001191
Organism Name
Acidimicrobium ferrooxidans ICP, DSM 10331  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Acidimicrobium  
Genus Synonyms
  
Species
Acidimicrobium ferrooxidans  
Subspecies
  
Species Synonyms
  
Strain
ICP, DSM 10331  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 10331  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5718  
Exemplar Name
Acidimicrobium ferrooxidans  
Taxon DOI
10.1601/tx.5718  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 525909
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Acidimicrobiia  
NCBI Order
Acidimicrobiales  
NCBI Family
Acidimicrobiaceae  
NCBI Genus
Acidimicrobium  
NCBI Species
Acidimicrobium ferrooxidans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 161979
Genbank 16S ID U75647
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
48  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Hot spring
Metabolisms Iron oxidizer
Phenotypes Acidophile
Energy Sources Autotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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