PROJECT NAME
GOLD Project ID
Gp0001190  
Project Name
Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446  
Other Names
  
Legacy ER Project ID
11078  
Legacy GOLD ID
Gi02324, Gc01110  
NCBI BioProject Name Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
NCBI BioProject ID 29405
NCBI BioProject Accession
PRJNA29405  
NCBI Locus Tag
Aaci  
NCBI BioSample Accession
SAMN00001901  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Thermophilic, acidophilic bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database
  
Genome Publications Standards in genomic sciences 2(1):18-Sep Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IA).
Other Publications
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
8kb, 454  
Number Of Reads
24980 Sanger, 363136 pyrosequencing  
Read Size
  
Vector
pMCL200  
GC Percent
62  
Chromosome Count
1  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0001190
Organism Name
Alicyclobacillus acidocaldarius acidocaldarius 104-IA, DSM 446  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Alicyclobacillus  
Genus Synonyms
  
Species
Alicyclobacillus acidocaldarius  
Subspecies
acidocaldarius  
Species Synonyms
  
Strain
104-IA, DSM 446  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 446  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4860  
Exemplar Name
Alicyclobacillus acidocaldarius  
Taxon DOI
10.1601/tx.10581  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 521098
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Alicyclobacillaceae  
NCBI Genus
Alicyclobacillus  
NCBI Species
Alicyclobacillus acidocaldarius  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 713755
Genbank 16S ID AB042056
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
  
Sporulation
Sporulating  
Temperature Range
Thermophile  
Temperature Optimum
60  
Salinity
  
pH
3 - 4  
Cell Diameter
0.7 - 0.8 um  
Cell Length
2 - 3 um  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Diseases None
Known Habitats Aquatic
Hot spring
Metabolisms
  
Phenotypes Thermoacidophile
Energy Sources Chemoorganotroph

 

 

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