PROJECT NAME
GOLD Project ID
Gp0001179  
Project Name
Meiothermus silvanus VI-R2, DSM 9946  
Other Names
  
Legacy ER Project ID
11062  
Legacy GOLD ID
Gi02308, Gc01327  
NCBI BioProject Name Meiothermus silvanus DSM 9946
NCBI BioProject ID 29551
NCBI BioProject Accession
PRJNA29551  
NCBI Locus Tag
Mesil  
NCBI BioSample Accession
SAMN02598469  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Thermophilic bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications Standards in genomic sciences 3(1):37-46 Complete genome sequence of Meiothermus silvanus type strain (VI-R2).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Meiothermus silvanus VI-R2, DSM 9946
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina GAii
Sanger
Library Method (MIGS-28)
  
Number Of Reads
9068515 Illumina  
Read Size
  
Vector
  
GC Percent
63  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0001179
Organism Name
Meiothermus silvanus VI-R2, DSM 9946  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
DEINOCOCCUS-THERMUS  
Genus
Meiothermus  
Genus Synonyms
  
Species
Meiothermus silvanus  
Subspecies
  
Species Synonyms
  
Strain
VI-R2, DSM 9946  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 9946  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.529  
Exemplar Name
Meiothermus silvanus  
Taxon DOI
10.1601/tx.537  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 526227
NCBI Kingdom
  
NCBI Phylum
Deinococcus-Thermus  
NCBI Class
Deinococci  
NCBI Order
Thermales  
NCBI Family
Thermaceae  
NCBI Genus
Meiothermus  
NCBI Species
Meiothermus silvanus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X84211
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Thermophile  
Temperature Optimum
55  
Salinity
  
pH
8.0 - 8.5  
Cell Diameter
0.5 - 0.8 um  
Cell Length
  
Color
Orange  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Hot spring
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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