PROJECT NAME
GOLD Project ID
Gp0001176  
Project Name
Capnocytophaga ochracea VPI 2845, DSM 7271  
Other Names
  
Legacy ER Project ID
11059  
Legacy GOLD ID
Gi02305, Gc01027  
NCBI BioProject Name Capnocytophaga ochracea DSM 7271
NCBI BioProject ID 29403
NCBI BioProject Accession
PRJNA29403  
NCBI Locus Tag
Coch  
NCBI BioSample Accession
SAMN00001911  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Human Pathogen
Medical
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Causes periodontitis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Isolation
Wikipedia
Database
  
Genome Publications Standards in genomic sciences 1(2):101-9 Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Capnocytophaga ochracea VPI 2845, DSM 7271
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Sanger
Library Method (MIGS-28)
6.5Kb  
Number Of Reads
  
Read Size
  
Vector
pMCL200, pcc1Fos  
GC Percent
40  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001176
Organism Name
Capnocytophaga ochracea VPI 2845, DSM 7271  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Capnocytophaga  
Genus Synonyms
  
Species
Capnocytophaga ochracea  
Subspecies
  
Species Synonyms
  
Strain
VPI 2845, DSM 7271  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 7271  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7969  
Exemplar Name
Capnocytophaga ochracea  
Taxon DOI
10.1601/tx.8134  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 521097
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Capnocytophaga  
NCBI Species
Capnocytophaga ochracea  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 120332
Genbank 16S ID U41350
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30 - 37  
Salinity
  
pH
  
Cell Diameter
0.42 - 0.6 um  
Cell Length
2.5 - 5.7um  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Opportunistic infection
Periodontal infection
Known Habitats Host
Human
Metabolisms
  
Phenotypes Opportunistic Pathogen
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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