PROJECT NAME
GOLD Project ID
Gp0001171  
Project Name
Planctopirus limnophila DSM 3776  
Other Names
Planctomyces limnophilus Mu 290, DSM 3776  
Legacy ER Project ID
11055  
Legacy GOLD ID
Gi02301, Gc01328  
NCBI BioProject Name Planctomyces limnophilus DSM 3776
NCBI BioProject ID 29411
NCBI BioProject Accession PRJNA29411
NCBI Locus Tag
Plim  
NCBI BioSample Accession SAMN02598463
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Supratim Mukherjee on 2017-03-10
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Leibniz Institute (Germany)
Project Description
Marine bacterium with a compartmentalized cell structure  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Wikipedia
Database
  
Genome Publications Standards in genomic sciences 3(1):47-56 Complete genome sequence of Planctomyces limnophilus type strain (M¿ 290).
Other Publications
  
PROJECT COMPOSITION
Study A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Planctopirus limnophila DSM 3776
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
54  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0001171
Organism Name
Planctopirus limnophila DSM 3776  
Other names (alias, synonyms, short names, common names)
Planctomyces limnophilus Mu 290, DSM 3776  
Organism Domain
BACTERIAL  
Phylogeny
PLANCTOMYCETES  
Genus
Planctopirus  
Genus Synonyms
Planctomyces  
Species
Planctopirus limnophila  
Subspecies
  
Species Synonyms
  
Strain
DSM 3776  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 3776  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7752  
Exemplar Name
Planctomyces limnophilus  
Taxon DOI
10.1601/tx.7752  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 521674
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Planctomycetes  
NCBI Class
Planctomycetia  
NCBI Order
Planctomycetales  
NCBI Family
Planctomycetaceae  
NCBI Genus
Planctopirus  
NCBI Species
Planctopirus limnophila  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X62911
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Sphere-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30 - 32  
Salinity
  
pH
  
Cell Diameter
1.1 - 1.5 um  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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