PROJECT NAME
GOLD Project ID
Gp0001167  
Project Name
Sebaldella termitidis ATCC 33386  
Other Names
  
Legacy ER Project ID
11051  
Legacy GOLD ID
Gi02490, Gc01144  
NCBI BioProject Name Sebaldella termitidis ATCC 33386
NCBI BioProject ID 29539
NCBI BioProject Accession
PRJNA29539  
NCBI Locus Tag
Sterm  
NCBI BioSample Accession
SAMN02598468  
PI Jonathan Eisen
Added By GEBA on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Uric acid-degrading termite gut bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences 2(2):220-7 Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300).
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Sebaldella termitidis ATCC 33386
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Sanger
Library Method (MIGS-28)
8Kb, 454, Illumina  
Number Of Reads
45934 Sanger, 760187 pyrosequencing  
Read Size
  
Vector
pMCL200  
GC Percent
33  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0001167
Organism Name
Sebaldella termitidis ATCC 33386  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FUSOBACTERIA  
Genus
Sebaldella  
Genus Synonyms
  
Species
Sebaldella termitidis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 33386  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33386  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7989  
Exemplar Name
Sebaldella termitidis  
Taxon DOI
10.1601/tx.8388  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 526218
NCBI Kingdom
  
NCBI Phylum
Fusobacteria  
NCBI Class
Fusobacteriia  
NCBI Order
Fusobacteriales  
NCBI Family
Leptotrichiaceae  
NCBI Genus
Sebaldella  
NCBI Species
Sebaldella termitidis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Insecta  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 120712
Genbank 16S ID M58678
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Gut
Host
Insect
Termite
Termite gut
Metabolisms Uricolytic
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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