PROJECT NAME
GOLD Project ID
Gp0001149  
Project Name
Rickettsia japonica YH  
Other Names
  
Legacy ER Project ID
11034  
Legacy GOLD ID
Gi02205, Gc01996  
NCBI BioProject Name Rickettsia japonica YH
NCBI BioProject ID 38487
NCBI BioProject Accession
PRJDA38487  
NCBI Locus Tag
RJP  
NCBI BioSample Accession
  
PI
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-05-20 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center
  
Collaborating Institute Yamaguchi University (Japan)
University of Tokyo (Switzerland)
Funding Agency
  
Project Description
Rickettsia japonica YH genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 8(9):e71861 Complete genomic DNA sequence of the East Asian spotted fever disease agent Rickettsia japonica.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Rickettsia japonica YH
Analysis Projects Rickettsia japonica YH
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
32  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0033795
Organism Name
Rickettsia japonica YH  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rickettsia  
Genus Synonyms
  
Species
Rickettsia japonica  
Subspecies
  
Species Synonyms
  
Strain
YH  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC VR-1363  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.964  
Exemplar Name
Rickettsia japonica  
Taxon DOI
10.1601/tx.964  
Biosafety Level
3  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 652620
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rickettsiales  
NCBI Family
Rickettsiaceae  
NCBI Genus
Rickettsia  
NCBI Species
Rickettsia japonica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Circulatory system  
Ecosystem Subtype
Blood  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Spotted fever
Known Habitats Host
Metabolisms
  
Phenotypes Intracellular
Pathogen
Energy Sources
  

 

 

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