PROJECT INFORMATION
GOLD Project ID
Gp0001143  
Project Name
Lactobacillus fermentum IFO 3956  
Other Names
  
Legacy ER Project ID
11028  
Legacy GOLD ID
Gi02199, Gc00787  
NCBI BioProject Name Lactobacillus fermentum IFO 3956
NCBI BioProject ID 18979
NCBI BioProject Accession PRJDA18979
NCBI Locus Tag
LAF  
NCBI BioSample Accession
PI Hidetoshi Morita
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Microbiome Project (HMP)
Food industry
Biotechnological
Medical
Sequencing Center University of Tokyo (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
A probiotic bacterium  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications DNA research : an international journal for rapid publication of reports on genes and genomes 15(3):151-61 Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.
Other Publications
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Lactobacillus fermentum IFO 3956
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2Kb, 5Kb  
Number Of Reads
35136  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001143
Organism Name
Lactobacillus fermentum IFO 3956  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus fermentum  
Subspecies
  
Species Synonyms
  
Strain
IFO 3956  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 3956  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 334390
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus fermentum  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Food production  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 44502
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Diseases None
Known Habitats Birds intestinal microflora
Human intestinal microflora
Host
Mammalian gastrointestinal tract
Metabolisms
  
Phenotypes Probiotic
Energy Sources
  
HMP METADATA
HMP ID
9362  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
Intestinal tract  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_608  

 

 

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