PROJECT INFORMATION | |
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GOLD Project ID
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Gp0001137
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Project Name
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Porphyromonas gingivalis ATCC 33277
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Other Names
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Legacy ER Project ID
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11023
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Legacy GOLD ID
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Gi02194, Gc00809
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NCBI BioProject Name | Porphyromonas gingivalis ATCC 33277 |
NCBI BioProject Accession
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PRJDA19051 |
NCBI Locus Tag
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PGN
|
NCBI BioSample Accession
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|
PI | Hattori M |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
|
Project Status
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Complete and Published
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Project Relevance
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Human Microbiome Project (HMP) Human Pathogen Medical |
Sequencing Center
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University of Tokyo
(Japan)
|
Collaborating Institute
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|
Funding Agency
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|
Project Description
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Associated with severe and chronic periodontal disease
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Is JGI Project |
No
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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DNA research : an international journal for rapid publication of reports on genes and genomes
15(4):215-25
Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis.
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Human Microbiome Project (HMP) Reference Genomes |
Organism |
Porphyromonas gingivalis ATCC 33277 |
Analysis Projects |
Porphyromonas gingivalis ATCC 33277 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Sanger |
Library Method
(MIGS-28)
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1-2Kb, 10Kb
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Library Layout
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Library Screening Method
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Number Of Reads
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36394
|
Read Size
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Vector
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pTS1
|
GC Percent |
48
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0001137 |
Organism Name |
Porphyromonas gingivalis ATCC 33277
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
BACTEROIDETES
|
Genus |
Porphyromonas
|
Genus Synonyms |
|
Species |
Porphyromonas gingivalis
|
Subspecies |
|
Species Synonyms |
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Strain |
ATCC 33277
|
Strain Synonyms |
|
Serovar/Cultivar |
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Culture Collection ID |
ATCC 33277
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.7953
|
Exemplar Name |
Porphyromonas gingivalis
|
Taxon DOI |
10.1601/tx.8029
|
Biosafety Level |
2
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
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ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
431947 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Bacteroidetes
|
NCBI Class |
Bacteroidia
|
NCBI Order |
Bacteroidales
|
NCBI Family |
Porphyromonadaceae
|
NCBI Genus |
Porphyromonas
|
NCBI Species |
Porphyromonas gingivalis
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Mammals: Human
|
Ecosystem Type |
Digestive system
|
Ecosystem Subtype |
Oral cavity
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
109096 |
Genbank 16S ID |
L16492 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Anaerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Nonmotile
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Sporulation |
Nonsporulating
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Temperature Range |
Mesophile
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Salinity |
|
pH |
|
Cell Diameter |
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Cell Length |
|
Color |
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Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
Periodontal infection Dental plaque |
Known Habitats |
Host Oral cavity Gastrointestinal tract Colon Respiratory tract |
Metabolisms |
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Phenotypes |
Pathogen |
Energy Sources |
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CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
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Differentiated Cells |
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Position Of Heterocysts |
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Cysts |
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Mode Of Reproduction |
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Trichome |
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Trichome Type |
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Carotenoids |
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Pigments |
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Phage Infectivity |
|
Phage Type |
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Restriction Enzyme |
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Toxin Production |
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Toxin Type |
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Secondary Metabolites |
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Developmental Cycle |
|
Branching |
|
Gas Vesicles |
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Gas Vesicle Type |
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Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
HMP METADATA | |
---|---|
HMP ID |
9364
|
Show in DACC? |
Yes
|
HMP Project Status |
Complete
|
BEI Status |
|
NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
Isolate Suggestion Source |
|
HMP Isolation Body Sample Site |
Oral
|
HMP Isolation Body Sample Subsite |
Gingival crevices
|
HMP Finishing Goal |
|
Source, Sample & Medical Relevance Comments |
|
Isolate Availability Comments |
|
Project Comments |
|
DNA Received |
Yes
|
Date DNA Received |
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Date Sequencing Begins |
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Date Draft Sequencing Completed |
|
Cross Reference ID |
HOMD: tax_619
|
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