Studies
|
53,970 |
|
Biosamples
|
170,233 |
|
Sequencing Projects
|
480,729 |
|
Analysis Projects
|
360,451 |
| Organisms | 467,880 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0001137
|
|
Project Name
|
Porphyromonas gingivalis ATCC 33277
|
|
Other Names
|
|
|
Legacy ER Project ID
|
11023
|
|
Legacy GOLD ID
|
Gi02194, Gc00809
|
| NCBI BioProject Name | Porphyromonas gingivalis ATCC 33277 |
|
NCBI BioProject Accession
|
PRJDA19051 |
|
NCBI Locus Tag
|
PGN
|
|
NCBI BioSample Accession
|
|
| PI | Hattori M |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Human Microbiome Project (HMP) Human Pathogen Medical |
|
Sequencing Center
|
University of Tokyo
(Japan)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Associated with severe and chronic periodontal disease
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
DNA research : an international journal for rapid publication of reports on genes and genomes
15(4):215-25
Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis.
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Human Microbiome Project (HMP) Reference Genomes |
| Organism |
Porphyromonas gingivalis ATCC 33277 |
| Analysis Projects |
Porphyromonas gingivalis ATCC 33277 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
1-2Kb, 10Kb
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
36394
|
|
Read Size
|
|
|
Vector
|
pTS1
|
| GC Percent |
48
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0001137 |
| Organism Name |
Porphyromonas gingivalis ATCC 33277
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACTEROIDETES
|
| Genus |
Porphyromonas
|
| Genus Synonyms |
|
| Species |
Porphyromonas gingivalis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
ATCC 33277
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 33277
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.7953
|
| Exemplar Name |
Porphyromonas gingivalis
|
| Taxon DOI |
10.1601/tx.8029
|
| Biosafety Level |
2
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
431947 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidetes
|
| NCBI Class |
Bacteroidia
|
| NCBI Order |
Bacteroidales
|
| NCBI Family |
Porphyromonadaceae
|
| NCBI Genus |
Porphyromonas
|
| NCBI Species |
Porphyromonas gingivalis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Oral cavity
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
109096 |
| Genbank 16S ID |
L16492 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Anaerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
Periodontal infection Dental plaque |
| Known Habitats |
Host Oral cavity Gastrointestinal tract Colon Respiratory tract |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
| HMP METADATA | |
|---|---|
| HMP ID |
9364
|
| Show in DACC? |
Yes
|
| HMP Project Status |
Complete
|
| BEI Status |
|
| NCBI Submission Status |
6. annotation (and sequence) public on NCBI site
|
| Isolate Suggestion Source |
|
| HMP Isolation Body Sample Site |
Oral
|
| HMP Isolation Body Sample Subsite |
Gingival crevices
|
| HMP Finishing Goal |
|
| Source, Sample & Medical Relevance Comments |
|
| Isolate Availability Comments |
|
| Project Comments |
|
| DNA Received |
Yes
|
| Date DNA Received |
|
| Date Sequencing Begins |
|
| Date Draft Sequencing Completed |
|
| Cross Reference ID |
HOMD: tax_619
|
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