PROJECT NAME
GOLD Project ID
Gp0001137  
Project Name
Porphyromonas gingivalis ATCC 33277  
Other Names
  
Legacy ER Project ID
11023  
Legacy GOLD ID
Gi02194, Gc00809  
NCBI BioProject Name Porphyromonas gingivalis ATCC 33277
NCBI BioProject ID 19051
NCBI BioProject Accession
PRJDA19051  
NCBI Locus Tag
PGN  
NCBI BioSample Accession
  
PI Hattori M
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Microbiome Project (HMP)
Human Pathogen
Medical
Sequencing Center
  
Collaborating Institute University of Tokyo (Switzerland)
Funding Agency
  
Project Description
Associated with severe and chronic periodontal disease  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Wikipedia
Database
  
Genome Publications DNA research : an international journal for rapid publication of reports on genes and genomes 15(4):215-25 Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Porphyromonas gingivalis ATCC 33277
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1-2Kb, 10Kb  
Number Of Reads
36394  
Read Size
  
Vector
pTS1  
GC Percent
48  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001137
Organism Name
Porphyromonas gingivalis ATCC 33277  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Porphyromonas  
Genus Synonyms
  
Species
Porphyromonas gingivalis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 33277  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 33277  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7953  
Exemplar Name
Porphyromonas gingivalis  
Taxon DOI
10.1601/tx.8029  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 431947
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Porphyromonadaceae  
NCBI Genus
Porphyromonas  
NCBI Species
Porphyromonas gingivalis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 109096
Genbank 16S ID L16492
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Dental plaque
Periodontal infection
Known Habitats Colon
Gastrointestinal tract
Host
Oral cavity
Respiratory tract
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
9364  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
Gingival crevices  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_619  

 

 

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