PROJECT NAME
GOLD Project ID
Gp0001120  
Project Name
Oscillibacter valericigenes Sjm18-20  
Other Names
  
Legacy ER Project ID
11002  
Legacy GOLD ID
Gi02484, Gc01995  
NCBI BioProject Name Oscillibacter valericigenes NBRC 101213
NCBI BioProject ID 41823
NCBI BioProject Accession
PRJNA41823  
NCBI Locus Tag
OBV  
NCBI BioSample Accession
  
PI Fujita N
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Oscillibacter valericigenes NBRC 101213 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Database
  
Genome Publications Standards in genomic sciences 6(3):406-14 Complete genome sequence of Oscillibacter valericigenes Sjm18-20(T) (=NBRC 101213(T)).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Oscillibacter valericigenes Sjm18-20
Analysis Projects Oscillibacter valericigenes Sjm18-20
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
53  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0001120
Organism Name
Oscillibacter valericigenes Sjm18-20  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Oscillibacter  
Genus Synonyms
  
Species
Oscillibacter valericigenes  
Subspecies
  
Species Synonyms
  
Strain
Sjm18-20  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 101213  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.11314  
Exemplar Name
Oscillibacter valericigenes  
Taxon DOI
10.1601/tx.11314  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 351091
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Oscillospiraceae  
NCBI Genus
Oscillibacter  
NCBI Species
Oscillibacter valericigenes  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mollusca  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AB238598
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
6 - 6.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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