| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0001117
|
|
Project Name
|
Kitasatospora setae KM-6054, NBRC 14216
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10999
|
|
Legacy GOLD ID
|
Gi01853, Gc01542
|
| NCBI BioProject Name | Kitasatospora setae KM-6054 |
|
NCBI BioProject ID
|
19951 |
|
NCBI BioProject Accession
|
PRJDA19951 |
|
NCBI Locus Tag
|
KSE
|
|
NCBI BioSample Accession
|
|
| PI | Fujita N |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Antibiotic production Biotechnological |
|
Sequencing Center
|
National Institute of Technology and Evaluation
(Japan)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
produce setamycin (bafilomycin B1) possessing antitrichomonal activity
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
|
|
Database
|
|
|
Genome Publications
|
DNA research : an international journal for rapid publication of reports on genes and genomes
17(6):393-406
Genome sequence of Kitasatospora setae NBRC 14216T: an evolutionary snapshot of the family Streptomycetaceae.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Kitasatospora setae KM-6054, NBRC 14216 |
| Organism |
Kitasatospora setae KM-6054, NBRC 14216 |
| Analysis Projects |
Kitasatospora setae KM-6054, NBRC 14216 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
1.6, 6.5 and 37 kb inserts
|
|
Number Of Reads
|
50400
|
|
Read Size
|
|
|
Vector
|
pUC118 (TaKaRa), pCC1FOS (EPICENTRE)
|
| GC Percent |
74
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0001117 |
| Organism Name |
Kitasatospora setae KM-6054, NBRC 14216
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
ACTINOBACTERIA
|
| Genus |
Kitasatospora
|
| Genus Synonyms |
|
| Species |
Kitasatospora setae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
KM-6054, NBRC 14216, DSM 43861
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
NBRC 14216
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.7265
|
| Exemplar Name |
Streptomyces setae
|
| Taxon DOI |
10.1601/tx.7265
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
452652 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Actinobacteria
|
| NCBI Class |
Actinobacteria
|
| NCBI Order |
Streptomycetales
|
| NCBI Family |
Streptomycetaceae
|
| NCBI Genus |
Kitasatospora
|
| NCBI Species |
Kitasatospora setae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
|
| Motility |
|
| Sporulation |
Sporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram+
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
None |
| Known Habitats |
Soil |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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