PROJECT NAME
GOLD Project ID
Gp0001111  
Project Name
Deferribacter desulfuricans SSM1, DSM 14783  
Other Names
  
Legacy ER Project ID
10993  
Legacy GOLD ID
Gi01847, Gc01227  
NCBI BioProject Name Deferribacter desulfuricans SSM1
NCBI BioProject ID 37285
NCBI BioProject Accession
PRJDA37285  
NCBI Locus Tag
DEFDS  
NCBI BioSample Accession
  
PI Yoshihiro Takaki
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Deferribacter desulfuricans SSM1 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Isolation
Database
  
Genome Publications DNA research : an international journal for rapid publication of reports on genes and genomes 17(3):123-37 Bacterial lifestyle in a deep-sea hydrothermal vent chimney revealed by the genome sequence of the thermophilic bacterium Deferribacter desulfuricans SSM1.
Other Publications
  
PROJECT COMPOSITION
Studies Deferribacter desulfuricans SSM1, DSM 14783
Analysis Projects Deferribacter desulfuricans SSM1, DSM 14783
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
1.5 Kb, 5 Kb, 35 Kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
30  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0001111
Organism Name
Deferribacter desulfuricans SSM1, DSM 14783  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
DEFERRIBACTERES  
Genus
Deferribacter  
Genus Synonyms
  
Species
Deferribacter desulfuricans  
Subspecies
  
Species Synonyms
  
Strain
SSM1, DSM 14783  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 101012  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.611  
Exemplar Name
Deferribacter desulfuricans  
Taxon DOI
10.1601/tx.611  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 197162
NCBI Kingdom
  
NCBI Phylum
Deferribacteres  
NCBI Class
Deferribacteres  
NCBI Order
Deferribacterales  
NCBI Family
Deferribacteraceae  
NCBI Genus
Deferribacter  
NCBI Species
Deferribacter desulfuricans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Hydrothermal vents  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 302381
Genbank 16S ID AB086060
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
40 - 70  
Salinity
  
pH
5 - 7.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Hot spring
Hydrothermal vent
Marine
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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