PROJECT NAME
GOLD Project ID
Gp0001108  
Project Name
Sphingobium japonicum UT26S  
Other Names
  
Legacy ER Project ID
10990  
Legacy GOLD ID
Gi01844, Gc01274  
NCBI BioProject Name Sphingobium japonicum UT26S
NCBI BioProject ID 19949
NCBI BioProject Accession
PRJDA19949  
NCBI Locus Tag
SJA  
NCBI BioSample Accession
  
PI Nagata, Y.
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-08-18 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
able to degrade hexachlorocyclohexane which has been used extensively as insect control agents in the health and agriculture fields  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information National Institute of Technology and Evaluation (NITE)
Database
  
Genome Publications Journal of bacteriology 192(21):5852-3 Complete genome sequence of the representative ?-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Sphingobium japonicum UT26S
Analysis Projects Sphingobium japonicum UT26S
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
92400  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
2  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0001108
Organism Name
Sphingobium japonicum UT26S  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Sphingobium  
Genus Synonyms
  
Species
Sphingobium japonicum  
Subspecies
  
Species Synonyms
  
Strain
UT26S  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
NBRC 101211  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9624  
Exemplar Name
Sphingobium japonicum  
Taxon DOI
10.1601/tx.9624  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 452662
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Sphingomonadales  
NCBI Family
Sphingomonadaceae  
NCBI Genus
Sphingobium  
NCBI Species
Sphingobium japonicum  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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