PROJECT INFORMATION
GOLD Project ID
Gp0001105  
Project Name
Pelodictyon phaeoclathratiforme BU-1  
Other Names
  
Legacy ER Project ID
10987  
Legacy GOLD ID
Gi00440, Gc00834  
NCBI BioProject Name Pelodictyon phaeoclathratiforme BU-1
NCBI BioProject ID 13011
NCBI BioProject Accession PRJNA13011
NCBI Locus Tag
Ppha  
NCBI BioSample Accession SAMN02598283
PI Donald Bryant
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Phototrophic green sulfur bacterium that lives in hydrogen sulfide-contaminated environments  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Chlorobia, 8 species
Analysis Projects Pelodictyon phaeoclathratiforme BU-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
48  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001105
Organism Name
Pelodictyon phaeoclathratiforme BU-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROBI  
Genus
Pelodictyon  
Genus Synonyms
  
Species
Pelodictyon phaeoclathratiforme  
Subspecies
  
Species Synonyms
  
Strain
BU-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 5477  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.801  
Exemplar Name
Pelodictyon clathratiforme  
Taxon DOI
10.1601/tx.803  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 324925
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chlorobi  
NCBI Class
Chlorobia  
NCBI Order
Chlorobiales  
NCBI Family
Chlorobiaceae  
NCBI Genus
Pelodictyon  
NCBI Species
Pelodictyon phaeoclathratiforme  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 303403
Genbank 16S ID Y08108
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
15 - 25C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Marine
Fresh water
Metabolisms
  
Phenotypes Green sulfur
Energy Sources Phototroph
Photosynthetic

 

 

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