PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0001046
|
Project Name
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Bordetella petrii DSM 12804
|
Other Names
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Bordetella petrii Se-1111R
|
Legacy ER Project ID
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10927
|
Legacy GOLD ID
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Gi00083, Gc00697
|
NCBI BioProject Name | Bordetella petrii DSM 12804 |
NCBI BioProject ID
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28135 |
NCBI BioProject Accession
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PRJNA28135 |
NCBI Locus Tag
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BPET
|
NCBI BioSample Accession
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SAMEA3138272 |
PI | Gross R |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
Hema Katta
on 2019-03-29 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Medical |
Sequencing Center
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Bielefeld University
(Germany)
University of Wuerzburg (Germany) |
Collaborating Institute
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|
Funding Agency
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Helmholtz Centre for Infection Research
(Germany)
|
Project Description
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Soil bacterium related to several human and animal pathogens
|
Is JGI Project |
No
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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|
Database
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|
Genome Publications
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BMC genomics
9(449):449
The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae.
|
Other Publications
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|
SRA Experiment |
|
PROJECT COMPOSITION | |
Study |
Bordetella petrii DSM 12804 |
Organism |
Bordetella petrii DSM 12804 |
Analysis Projects |
Bordetella petrii DSM 12804 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
---|---|
Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Contamination Screening Input
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|
DNA Amplification Method
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|
Sequencing Comments
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|
DNA Amplification Kit
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|
Sequencing Technology
(MIGS-29)
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|
Library Method
(MIGS-28)
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1 kb, 3 kb and 10 kb
|
Library Layout
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|
Library Screening Method
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|
Number Of Reads
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206616
|
Read Size
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|
Vector
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pTZ18R
|
GC Percent |
65
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0001046 |
Organism Name |
Bordetella petrii DSM 12804
|
Other names (alias, synonyms, short names, common names) |
Bordetella petrii Se-1111R
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-BETA
|
Genus |
Bordetella
|
Genus Synonyms |
|
Species |
Bordetella petrii
|
Subspecies |
|
Species Synonyms |
|
Strain |
DSM 12804
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
DSM 12804
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.1753
|
Exemplar Name |
Bordetella petrii
|
Taxon DOI |
10.1601/tx.1753
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
340100 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Betaproteobacteria
|
NCBI Order |
Burkholderiales
|
NCBI Family |
Alcaligenaceae
|
NCBI Genus |
Bordetella
|
NCBI Species |
Bordetella petrii
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Engineered
|
Ecosystem Category |
Biotransformation
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
163371 |
Genbank 16S ID |
AJ249861 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Anaerobe
|
Cell Shape |
|
Motility |
Nonmotile
|
Sporulation |
|
Temperature Range |
Mesophile
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
None |
Known Habitats |
Sediment Aquatic Fresh water |
Metabolisms |
Selenate reducer |
Phenotypes |
Pathogen |
Energy Sources |
Heterotroph |
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