PROJECT NAME
GOLD Project ID
Gp0001040  
Project Name
Bifidobacterium dentium Bd1  
Other Names
  
Legacy ER Project ID
10922  
Legacy GOLD ID
Gi01668, Gc01161  
NCBI BioProject Name Bifidobacterium dentium Bd1
NCBI BioProject ID 17583
NCBI BioProject Accession
PRJNA17583  
NCBI Locus Tag
BDP  
NCBI BioSample Accession
  
PI Ventura M
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Food industry
Sequencing Center Agencourt Bioscience (USA)
University of Parma (Italy)
National University of Ireland (Ireland)
Collaborating Institute University of Parma (Italy)
Funding Agency
  
Project Description
Isolated from human dental caries  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 5(12):e1000785 The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavity.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Bifidobacterium dentium Bd1
Analysis Projects Bifidobacterium dentium Bd1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
3kb, fosmid library  
Number Of Reads
  
Read Size
  
Vector
pCCqFos  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001040
Organism Name
Bifidobacterium dentium Bd1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Bifidobacterium  
Genus Synonyms
  
Species
Bifidobacterium dentium  
Subspecies
  
Species Synonyms
  
Strain
Bd1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 27534  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7690  
Exemplar Name
Bifidobacterium dentium  
Taxon DOI
10.1601/tx.7690  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 401473
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Bifidobacteriales  
NCBI Family
Bifidobacteriaceae  
NCBI Genus
Bifidobacterium  
NCBI Species
Bifidobacterium dentium  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID D86183
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes Commensal
Non-Pathogen
Probiotic
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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