PROJECT NAME
GOLD Project ID
Gp0000934  
Project Name
Ammonifex degensii KC4  
Other Names
  
Legacy ER Project ID
10825  
Legacy GOLD ID
Gc01119, Gc02209  
NCBI BioProject Name Ammonifex degensii KC4
NCBI BioProject ID 12390
NCBI BioProject Accession
PRJNA12390  
NCBI Locus Tag
Adeg  
NCBI BioSample Accession
SAMN02598268  
PI Cheryl Kerfeld
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Educational
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of California, Los Angeles (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
This strain (KC4; DSM10501) is the type strain of the species. The primary motivation of this whole genome shotgun sequencing project is to provide genomics-based research experience to UCLA undergraduates. The UCLA Undergraduate Genomics Research Initiative is a collaboration among Life Sciences and General Education courses  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Isolation
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Ammonifex degensii KC4 Proposal # CSP2006-060510
Analysis Projects Ammonifex degensii KC4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000934
Organism Name
Ammonifex degensii KC4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Ammonifex  
Genus Synonyms
  
Species
Ammonifex degensii  
Subspecies
  
Species Synonyms
  
Strain
KC4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 10501  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4520  
Exemplar Name
Ammonifex degensii  
Taxon DOI
10.1601/tx.4520  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 429009
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Thermoanaerobacterales  
NCBI Family
Thermoanaerobacteraceae  
NCBI Genus
Ammonifex  
NCBI Species
Ammonifex degensii  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Thermal springs  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 268617
Genbank 16S ID U34975
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
70  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Hot spring
Metabolisms
  
Phenotypes
  
Energy Sources Chemolithoautotroph

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?