PROJECT NAME
GOLD Project ID
Gp0000932  
Project Name
Alteromonas macleodii Deep ecotype, DSM 17117  
Other Names
  
Legacy ER Project ID
10824  
Legacy GOLD ID
Gi00833, Gc00846  
NCBI BioProject Name Alteromonas macleodii 'Deep ecotype'
NCBI BioProject ID 13374
NCBI BioProject Accession
PRJNA13374  
NCBI Locus Tag
MADE  
NCBI BioSample Accession
SAMN02603915  
PI Francisco Rodriguez-Valera
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-08-18 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute University Miguel Hernandez (Spain)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
Important in understanding barophilic adaptations  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Information
Isolation
Database
  
Genome Publications The ISME journal 2(12):1194-212 Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Alteromonas macleodii strains, University Miguel Hernandez, Spain
Analysis Projects Alteromonas macleodii Deep ecotype, DSM 17117
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Sanger
Library Method (MIGS-28)
4kb, 40kb  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000932
Organism Name
Alteromonas macleodii Deep ecotype, DSM 17117  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Alteromonas  
Genus Synonyms
  
Species
Alteromonas macleodii  
Subspecies
  
Species Synonyms
  
Strain
Deep ecotype, DSM 17117  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 17117  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 314275
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Alteromonadaceae  
NCBI Genus
Alteromonas  
NCBI Species
Alteromonas mediterranea  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Deep sea
Marine
Metabolisms
  
Phenotypes Barophile
Energy Sources Heterotroph

 

 

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