PROJECT NAME
GOLD Project ID
Gp0000930  
Project Name
Rhizobium rhizogenes bv. II K84  
Other Names
  
Legacy ER Project ID
10821  
Legacy GOLD ID
Gi00020, Gc00942  
NCBI BioProject Name Agrobacterium radiobacter K84
NCBI BioProject ID 13402
NCBI BioProject Accession
PRJNA13402  
NCBI Locus Tag
Arad  
NCBI BioSample Accession
SAMN02602977  
PI Nester EW
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Human Pathogen
Medical
Plant Pathogen
Root Nodulating Bacteria (RNB)
Sequencing Center
  
Collaborating Institute University of Washington (USA)
Funding Agency National Science Foundation (NSF) (USA)
Project Description
This strain has been developed for worldwide commercial use to control crown gall.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information MicrobeWiki
Taxonomy
Entrez
Database
  
Genome Publications Journal of bacteriology 191(8):2501-11 Genome sequences of three agrobacterium biovars help elucidate the evolution of multichromosome genomes in bacteria.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Rhizobium rhizogenes K84
Analysis Projects Rhizobium rhizogenes bv. II K84
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2kb, 4kb, 8kb  
Number Of Reads
87000  
Read Size
  
Vector
pUC18  
GC Percent
60  
Chromosome Count
2  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0000930
Organism Name
Rhizobium rhizogenes bv. II K84  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Agrobacterium  
Genus Synonyms
Agrobacterium  
Species
Agrobacterium radiobacter  
Subspecies
  
Species Synonyms
radiobacter  
Strain
K84  
Strain Synonyms
  
Serovar-Biovar
bv II  
Culture Collection ID
ATCC BAA-846  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 311403
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Agrobacterium  
NCBI Species
Agrobacterium tumefaciens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 114617
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
25 - 28  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Host
Root nodule
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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