PROJECT NAME
GOLD Project ID
Gp0000895  
Project Name
Pseudoflavonifractor capillosus ATCC 29799  
Other Names
  
Legacy ER Project ID
10786  
Legacy GOLD ID
Gi01714  
NCBI BioProject Name Pseudoflavonifractor capillosus ATCC 29799
NCBI BioProject ID 18173
NCBI BioProject Accession
PRJNA18173  
NCBI Locus Tag
BACCAP  
NCBI BioSample Accession
SAMN00627059  
PI Human Gut Community Users
Added By Heather Creasy on 2007-11-27 00:00:00.0
Last Modified By Auto script update processes on 2014-05-20 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Human Gut Microbiome Initiative (HGMI)
Human Microbiome Project (HMP)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
HMP
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Pseudoflavonifractor capillosus ATCC 29799
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS20
Sanger
Library Method (MIGS-28)
  
Number Of Reads
56246  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000895
Organism Name
Pseudoflavonifractor capillosus ATCC 29799  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Pseudoflavonifractor  
Genus Synonyms
  
Species
Pseudoflavonifractor capillosus  
Subspecies
  
Species Synonyms
  
Strain
ATCC 29799  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 29799  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7940  
Exemplar Name
Pseudoflavonifractor capillosus  
Taxon DOI
10.1601/tx.17810  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 411467
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
  
NCBI Genus
Pseudoflavonifractor  
NCBI Species
Pseudoflavonifractor capillosus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AY136666
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Various infections
Known Habitats Host
Human fecal
Human intestinal microflora
Metabolisms
  
Phenotypes Opportunistic Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  
HMP METADATA
HMP ID
110  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2005-05-28  
Date Sequencing Begins
2005-06-28  
Date Draft Sequencing Completed
2007-03-29  
Cross Reference ID
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?