PROJECT INFORMATION
GOLD Project ID
Gp0000877  
Project Name
Schaalia odontolytica ATCC 17982  
Other Names
  
Legacy ER Project ID
10767  
Legacy GOLD ID
Gi01705  
NCBI BioProject Name Actinomyces odontolyticus ATCC 17982
NCBI BioProject Accession PRJNA18171
NCBI Locus Tag
ACTODO  
NCBI BioSample Accession SAMN00627054
PI Human Gut Community Users
Added By Heather Creasy on 2007-11-27
Last Modified By Supratim Mukherjee on 2019-03-20
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Human Gut Microbiome Initiative (HGMI)
Dental Pathogen
Human Pathogen
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX076105  (Link to NCBI )
Experiment Title ACTINOMYCES ODONTOLYTICUS
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name AOAC-454_060823_TUBE1
Library Layout SINGLE
Library Instrument 454 GS 20
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Schaalia odontolytica ATCC 17982
Analysis Projects Schaalia odontolytica ATCC 17982
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
454 GS20
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
45682  
Read Size
  
Vector
  
GC Percent
65  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000877
Organism Name
Schaalia odontolytica ATCC 17982  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Schaalia  
Genus Synonyms
  
Species
Schaalia odontolytica  
Subspecies
  
Species Synonyms
  
Strain
ATCC 17982  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 17982  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 411466
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinomycetia  
NCBI Order
Actinomycetales  
NCBI Family
Actinomycetaceae  
NCBI Genus
Schaalia  
NCBI Species
Schaalia odontolytica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral cavity  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Eye infection
Lung infection
Oral abscesses
Septicemia
Known Habitats Human intestinal microflora
Host
Human oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
HMP METADATA
HMP ID
50  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2006-08-23  
Date Sequencing Begins
2006-09-23  
Date Draft Sequencing Completed
2007-03-16  
Cross Reference ID
HOMD: tax_701  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?