Studies
|
52,460 |
|
Biosamples
|
170,231 |
|
Sequencing Projects
|
472,495 |
|
Analysis Projects
|
360,355 |
| Organisms | 460,370 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0000706
|
|
Project Name
|
Brucella melitensis bv. 1 16M
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10612
|
|
Legacy GOLD ID
|
Gc00074
|
| NCBI BioProject Name | Brucella melitensis bv. 1 str. 16M |
|
NCBI BioProject Accession
|
PRJNA180 |
|
NCBI Locus Tag
|
BMEI
|
|
NCBI BioSample Accession
|
SAMN02603416 |
| PI | Delvecchio V |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
JGI automated process
on 2014-05-20 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Animal Pathogen Biothreat Human Pathogen Medical |
|
Sequencing Center
|
Integrated Genomics
(USA)
|
|
Collaborating Institute
|
University of Scranton
|
|
Funding Agency
|
Defense Advanced Research Projects Agency (DARPA)
(USA)
|
|
Project Description
|
Causes brucellosis and undulant fever
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Proceedings of the National Academy of Sciences of the United States of America
The genome sequence of the facultative intracellular pathogen Brucella melitensis.
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Brucella melitensis bv 1, 16M |
| Organism |
Brucella melitensis bv. 1 16M |
| Analysis Projects |
Brucella melitensis bv. 1 16M |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
2?3-kb, 30?35-kb,10?12-kb
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
37000
|
|
Read Size
|
|
|
Vector
|
pGEM3, Lorist 6, lambda DASH
|
| GC Percent |
57
|
| Chromosome Count |
2
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000706 |
| Organism Name |
Brucella melitensis bv. 1 16M
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-ALPHA
|
| Genus |
Brucella
|
| Genus Synonyms |
|
| Species |
Brucella melitensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
16M
|
| Strain Synonyms |
|
| Serovar/Cultivar |
1
|
| Culture Collection ID |
ATCC 23456
|
| Type Strain |
Unknown
|
| Exemplar DOI |
10.1601/ex.1381
|
| Exemplar Name |
Brucella melitensis
|
| Taxon DOI |
10.1601/tx.1381
|
| Biosafety Level |
3
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
224914 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Alphaproteobacteria
|
| NCBI Order |
Hyphomicrobiales
|
| NCBI Family |
Brucellaceae
|
| NCBI Genus |
Brucella
|
| NCBI Species |
Brucella melitensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
129462 |
| Genbank 16S ID |
L26166 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
Grey
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Symbiotic |
| Symbiotic Physical Interaction |
Endosymbiotic intracellular
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles Pairs Chains |
| Diseases |
Brucellosis Bacteremia Infectious abortions Abortion Fever |
| Known Habitats |
Host Animal Human |
| Metabolisms |
|
| Phenotypes |
Pathogen Facultative intracellular |
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
