PROJECT INFORMATION | |
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GOLD Project ID
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Gp0000706
|
Project Name
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Brucella melitensis bv. 1 16M
|
Other Names
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|
Legacy ER Project ID
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10612
|
Legacy GOLD ID
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Gc00074
|
NCBI BioProject Name | Brucella melitensis bv. 1 str. 16M |
NCBI BioProject Accession
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PRJNA180 |
NCBI Locus Tag
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BMEI
|
NCBI BioSample Accession
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SAMN02603416 |
PI | Delvecchio V |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
JGI automated process
on 2014-05-20 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Animal Pathogen Biothreat Human Pathogen Medical |
Sequencing Center
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Integrated Genomics
(USA)
|
Collaborating Institute
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University of Scranton
|
Funding Agency
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Defense Advanced Research Projects Agency (DARPA)
(USA)
|
Project Description
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Causes brucellosis and undulant fever
|
Is JGI Project |
No
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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|
JGI Award DOI
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Genome Publications
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Proceedings of the National Academy of Sciences of the United States of America
The genome sequence of the facultative intracellular pathogen Brucella melitensis.
|
Other Publications
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Ignored Publications
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Unassigned Publications
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|
SRA Experiment |
|
PROJECT COMPOSITION | |
Study |
Brucella melitensis bv 1, 16M |
Organism |
Brucella melitensis bv. 1 16M |
Analysis Projects |
Brucella melitensis bv. 1 16M |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Contamination Screening Input
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|
DNA Amplification Method
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|
Single Cell Lysis Protocol
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|
Single Cell Lysis Approach
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|
Sequencing Comments
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|
DNA Amplification Kit
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|
Sequencing Technology
(MIGS-29)
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|
Library Method
(MIGS-28)
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2?3-kb, 30?35-kb,10?12-kb
|
Library Layout
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Library Screening Method
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Number Of Reads
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37000
|
Read Size
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|
Vector
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pGEM3, Lorist 6, lambda DASH
|
GC Percent |
57
|
Chromosome Count |
2
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0000706 |
Organism Name |
Brucella melitensis bv. 1 16M
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-ALPHA
|
Genus |
Brucella
|
Genus Synonyms |
|
Species |
Brucella melitensis
|
Subspecies |
|
Species Synonyms |
|
Strain |
16M
|
Strain Synonyms |
|
Serovar/Cultivar |
1
|
Culture Collection ID |
ATCC 23456
|
Type Strain |
Unknown
|
Exemplar DOI |
10.1601/ex.1381
|
Exemplar Name |
Brucella melitensis
|
Taxon DOI |
10.1601/tx.1381
|
Biosafety Level |
3
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
224914 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Proteobacteria
|
NCBI Class |
Alphaproteobacteria
|
NCBI Order |
Hyphomicrobiales
|
NCBI Family |
Brucellaceae
|
NCBI Genus |
Brucella
|
NCBI Species |
Brucella melitensis
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Mammals
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
129462 |
Genbank 16S ID |
L26166 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Nonmotile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
Grey
|
Gram Staining |
Gram-
|
Biotic Relationships | Symbiotic |
Symbiotic Physical Interaction |
Endosymbiotic intracellular
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
Singles Pairs Chains |
Diseases |
Brucellosis Bacteremia Infectious abortions Abortion Fever |
Known Habitats |
Host Animal Human |
Metabolisms |
|
Phenotypes |
Pathogen Facultative intracellular |
Energy Sources |
|
CYANOBACTERIA METADATA | |
Filaments |
|
Filament Type |
|
Differentiated Cells |
|
Position Of Heterocysts |
|
Cysts |
|
Mode Of Reproduction |
|
Trichome |
|
Trichome Type |
|
Carotenoids |
|
Pigments |
|
Phage Infectivity |
|
Phage Type |
|
Restriction Enzyme |
|
Toxin Production |
|
Toxin Type |
|
Secondary Metabolites |
|
Developmental Cycle |
|
Branching |
|
Gas Vesicles |
|
Gas Vesicle Type |
|
Diagnostic Inclusion Body Information |
|
Extracellular Structures |
|
Bloom Forming |
|
Pigment Type |
|
Complementary chromatic adaptation (CCA) |
|
Medium Types |
|
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