PROJECT NAME
GOLD Project ID
Gp0000671  
Project Name
Shewanella oneidensis MR-1  
Other Names
  
Legacy ER Project ID
10581  
Legacy GOLD ID
Gc00105  
NCBI BioProject Name Shewanella oneidensis MR-1
NCBI BioProject ID 335
NCBI BioProject Accession
PRJNA335  
NCBI Locus Tag
SO  
NCBI BioSample Accession
SAMN02604014  
PI Heidelberg JF
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Biotechnological
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
May be used for bioremediation of chromium and uranium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Wikipedia
Database
  
Genome Publications Nature biotechnology Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Shewanella oneidensis MR-1
Analysis Projects Shewanella oneidensis MR-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
2-3kb, 18kb inserts  
Number Of Reads
71777  
Read Size
  
Vector
pUC-derived and lambda -DASH II vectors  
GC Percent
46  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000671
Organism Name
Shewanella oneidensis MR-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shewanella  
Genus Synonyms
  
Species
Shewanella oneidensis  
Subspecies
  
Species Synonyms
  
Strain
MR-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700550  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2931  
Exemplar Name
Shewanella oneidensis  
Taxon DOI
10.1601/tx.2931  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 211586
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Shewanellaceae  
NCBI Genus
Shewanella  
NCBI Species
Shewanella oneidensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Lentic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 121993
Genbank 16S ID AF005251
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Aquatic
Fresh water
Sediment
Metabolisms Metal reducer
Phenotypes Opportunistic Pathogen
Energy Sources Heterotroph

 

 

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