PROJECT NAME
GOLD Project ID
Gp0000659  
Project Name
Staphylococcus epidermidis ATCC 12228  
Other Names
  
Legacy ER Project ID
10569  
Legacy GOLD ID
Gc00117  
NCBI BioProject Name Staphylococcus epidermidis ATCC 12228
NCBI BioProject ID 279
NCBI BioProject Accession
PRJNA279  
NCBI Locus Tag
SE  
NCBI BioSample Accession
SAMN02603126  
PI Wen Y-M
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Chinese National Human Genome Center at Shanghai (China)
Collaborating Institute Fudan University (China)
Funding Agency National Natural Science Foundation of China (NSFC) (China)
Project Description
Used for detection of residual antibiotics in food products  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Wikipedia
Taxonomy
Database
  
Genome Publications Molecular microbiology Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Staphylococcus epidermidis ATCC 12228
Analysis Projects Staphylococcus epidermidis ATCC 12228
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
1.5?3.0kb, 8.0?10.0kb  
Number Of Reads
45835  
Read Size
  
Vector
pUC18/SmaI/BAP, pUC18/BamHI/CIP  
GC Percent
32  
Chromosome Count
1  
Plasmid Count
6  
ORGANISM NAME
GOLD Organism ID Go0000659
Organism Name
Staphylococcus epidermidis ATCC 12228  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Staphylococcus  
Genus Synonyms
  
Species
Staphylococcus epidermidis  
Subspecies
  
Species Synonyms
  
Strain
ATCC 12228  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 12228  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 176280
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Staphylococcaceae  
NCBI Genus
Staphylococcus  
NCBI Species
Staphylococcus epidermidis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 53811
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Coccus-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30 - 37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Clusters
Singles
Diseases None
Known Habitats Host
Metabolisms
  
Phenotypes Non-Biofilm forming
Non-Pathogen
Energy Sources
  

 

 

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