PROJECT NAME
GOLD Project ID
Gp0000653  
Project Name
Tropheryma whipplei TW08/27  
Other Names
  
Legacy ER Project ID
10563  
Legacy GOLD ID
Gc00123  
NCBI BioProject Name Tropheryma whipplei TW08/27
NCBI BioProject ID 354
NCBI BioProject Accession
PRJNA354  
NCBI Locus Tag
TW  
NCBI BioSample Accession
SAMEA1705925  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Stanford University (USA)
Collaborating Institute Stanford University (USA)
University of Birmingham (USA)
Funding Agency Beowulf Genomics (United Kingdom)
Project Description
Causative agent of Whipple's disease.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Wikipedia
Taxonomy
Database
  
Genome Publications Lancet 361(9358):637-44 Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Tropheryma whipplei TW08/27
Analysis Projects Tropheryma whipplei TW08/27
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3.0-3.3 kb, 5.0-5.5 kb inserts  
Number Of Reads
18156  
Read Size
  
Vector
pUC19, pMAQ1b  
GC Percent
46  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000653
Organism Name
Tropheryma whipplei TW08/27  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Tropheryma  
Genus Synonyms
  
Species
Tropheryma whipplei  
Subspecies
  
Species Synonyms
  
Strain
TW08/27  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 218496
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
  
NCBI Genus
Tropheryma  
NCBI Species
Tropheryma whipplei  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Nervous system  
Ecosystem Subtype
Cerebrospinal fluid  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Whipple's disease
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?