PROJECT INFORMATION
GOLD Project ID
Gp0000652  
Project Name
Vibrio parahaemolyticus sv. O3:K6 RIMD 2210633  
Other Names
  
Legacy ER Project ID
10562  
Legacy GOLD ID
Gc00124  
NCBI BioProject Name Vibrio parahaemolyticus RIMD 2210633
NCBI BioProject ID 360
NCBI BioProject Accession PRJNA360
NCBI Locus Tag
VP  
NCBI BioSample Accession
PI Iida T
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center RIKEN (Japan)
Collaborating Institute Yamaguchi University (Japan)
Funding Agency
  
Project Description
Major cause of seafood-associated food poisoning  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Wikipedia
Database
  
Genome Publications Lancet 361(9359):743-9 Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.
Other Publications
  
PROJECT COMPOSITION
Study Vibrio parahaemolyticus RIMD 2210633
Analysis Projects Vibrio parahaemolyticus sv. O3:K6 RIMD 2210633
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1-2kb, 4-5kb inserts  
Number Of Reads
86624  
Read Size
  
Vector
pUC18  
GC Percent
45  
Chromosome Count
2  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000652
Organism Name
Vibrio parahaemolyticus sv. O3:K6 RIMD 2210633  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio parahaemolyticus  
Subspecies
  
Species Synonyms
  
Strain
RIMD 2210633  
Strain Synonyms
  
Serovar-Biovar
O3:K6  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 223926
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio parahaemolyticus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 377507
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
20 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Gastroenteritis
Known Habitats Host
Fresh water
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph

 

 

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