PROJECT NAME
GOLD Project ID
Gp0000650  
Project Name
Bacteroides thetaiotaomicron VPI-5482  
Other Names
  
Legacy ER Project ID
10560  
Legacy GOLD ID
Gc00126  
NCBI BioProject Name Bacteroides thetaiotaomicron VPI-5482
NCBI BioProject ID 399
NCBI BioProject Accession
PRJNA399  
NCBI Locus Tag
BT  
NCBI BioSample Accession
SAMN02604314  
PI Gordon JI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute AstraZeneca (USA)
Funding Agency NIH (USA)
AstraZeneca (USA)
Project Description
Dominant member of mammalian intestinal microflora  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Wikipedia
Taxonomy
Database Entrez
Genome Publications "Science (New York, N.Y.)" A genomic view of the human-Bacteroides thetaiotaomicron symbiosis.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Bacteroides thetaiotaomicron VPI-5482
Analysis Projects Bacteroides thetaiotaomicron VPI-5482
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1059 BAC library (average insert size 90 Kb), 1.5kb, 4kb inserts  
Number Of Reads
67938  
Read Size
  
Vector
  
GC Percent
43  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000650
Organism Name
Bacteroides thetaiotaomicron VPI-5482  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Bacteroides  
Genus Synonyms
  
Species
Bacteroides thetaiotaomicron  
Subspecies
  
Species Synonyms
  
Strain
VPI-5482  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 29148  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7990  
Exemplar Name
Bacteroides thetaiotaomicron  
Taxon DOI
10.1601/tx.7990  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 226186
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Bacteroidaceae  
NCBI Genus
Bacteroides  
NCBI Species
Bacteroides thetaiotaomicron  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Fecal  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 106468
Genbank 16S ID L16489
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Obligate anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Peritonitis
Known Habitats Feces
Gastrointestinal tract
Host
Intestinal tract
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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