PROJECT INFORMATION
GOLD Project ID
Gp0000646  
Project Name
Shigella flexneri sv. 2a 2457T  
Other Names
  
Legacy ER Project ID
10556  
Legacy GOLD ID
Gc00130  
NCBI BioProject Name Shigella flexneri 2a str. 2457T
NCBI BioProject ID 408
NCBI BioProject Accession PRJNA408
NCBI Locus Tag
S  
NCBI BioSample Accession SAMN02604096
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center University of Wisconsin, Madison (USA)
Collaborating Institute
  
Funding Agency National Institute of Allergy and Infectious Diseases (USA)
Project Description
Human-specific pathogen that causes endemic dysentery  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Wikipedia
Database
  
Genome Publications Infection and immunity Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457T.
Other Publications
  
PROJECT COMPOSITION
Study Shigella flexneri 2a 2457T
Analysis Projects Shigella flexneri sv. 2a 2457T
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
whole genome libraries  
Number Of Reads
66219  
Read Size
  
Vector
M13Janus, pBluescript KS  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0007206
Organism Name
Shigella flexneri sv. 2a 2457T  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shigella  
Genus Synonyms
  
Species
Shigella flexneri  
Subspecies
  
Species Synonyms
  
Strain
2457T  
Strain Synonyms
  
Serovar-Biovar
2a  
Culture Collection ID
ATCC 700930  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 198215
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Shigella  
NCBI Species
Shigella flexneri  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 581834
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Gastroenteritis
Dysenteria
Food poisoning
Known Habitats Host
Gastrointestinal tract
Feces
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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