PROJECT INFORMATION
GOLD Project ID
Gp0000637  
Project Name
Helicobacter hepaticus 3B1, ATCC 51449  
Other Names
  
Legacy ER Project ID
10547  
Legacy GOLD ID
Gc00139  
NCBI BioProject Name Helicobacter hepaticus ATCC 51449
NCBI BioProject ID 185
NCBI BioProject Accession PRJNA185
NCBI Locus Tag
HH  
NCBI BioSample Accession SAMN02604097
PI Suerbaum S
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Mice Pathogen
Medical
Sequencing Center MWG-Biotech
Collaborating Institute Massachusetts Institute of Technology (USA)
University of Wuerzburg (Germany)
ANRT (France)
Funding Agency NIH (USA)
PathoGenoMik (Germany)
Project Description
Causes hepatitis, typhlitis, hepatocellular tumors, and gastric bowel disease  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America The complete genome sequence of the carcinogenic bacterium Helicobacter hepaticus.
Other Publications
  
PROJECT COMPOSITION
Study Helicobacter hepaticus 3B1, ATCC 51449
Analysis Projects Helicobacter hepaticus 3B1, ATCC 51449
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
libraries (insert sizes, 700?3,000 bp)  
Number Of Reads
22034  
Read Size
  
Vector
  
GC Percent
36  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000637
Organism Name
Helicobacter hepaticus 3B1, ATCC 51449  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Helicobacter  
Genus Synonyms
  
Species
Helicobacter hepaticus  
Subspecies
  
Species Synonyms
  
Strain
3B1, ATCC 51449  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 51449  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 235279
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Helicobacteraceae  
NCBI Genus
Helicobacter  
NCBI Species
Helicobacter hepaticus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Excretory system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 45566
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Gastric bowel disease
Liver cancer
Hepatitis
Hepatic inflammation
Known Habitats Intestinal tract
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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