PROJECT NAME
GOLD Project ID
Gp0000629  
Project Name
Bordetella pertussis Tohama I  
Other Names
  
Legacy ER Project ID
10540  
Legacy GOLD ID
Gc00146  
NCBI BioProject Name Bordetella pertussis Tohama I
NCBI BioProject ID 26
NCBI BioProject Accession
PRJNA26  
NCBI Locus Tag
BP  
NCBI BioSample Accession
SAMEA1705933  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Pathogen strictly
Medical
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute University of Cambridge (United Kingdom)
Funding Agency Beowulf Genomics (United Kingdom)
Project Description
Causes bronchitis and other respiratory deseases  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Wikipedia
Taxonomy
Database
  
Genome Publications Nature genetics Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Bordetella pertussis Tohama I
Analysis Projects Bordetella pertussis Tohama I
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
three pUC18 genomic shotgun libraries with insert sizes of 1.0−4.0 kb and a pBACe3.6 library with insert sizes of 10−20 kb  
Number Of Reads
180120  
Read Size
  
Vector
pUC18, pBACe3.6  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000629
Organism Name
Bordetella pertussis Tohama I  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Bordetella  
Genus Synonyms
  
Species
Bordetella pertussis  
Subspecies
  
Species Synonyms
  
Strain
Tohama I  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-589  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 257313
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Alcaligenaceae  
NCBI Genus
Bordetella  
NCBI Species
Bordetella pertussis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 494022
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
35 - 37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Respiratory infection
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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