PROJECT INFORMATION
GOLD Project ID
Gp0000622  
Project Name
Synechococcus sp. WH8102  
Other Names
  
Legacy ER Project ID
10536  
Legacy GOLD ID
Gc00150  
NCBI BioProject Name Synechococcus sp. WH 8102
NCBI BioProject ID 230
NCBI BioProject Accession PRJNA230
NCBI Locus Tag
SYNW  
NCBI BioSample Accession SAMEA3138327
PI Robert Blankenship
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Nikos Kyrpides on 2014-07-14
Project Comments
  
Project Status
Complete and Published  
Project Relevance Ocean carbon cycle
Environmental
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of California, San Diego, Scripps Institute of Oceanography (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Marine cyanobacteria  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Cyanosite
Wikipedia
Database
  
Genome Publications Nature The genome of a motile marine Synechococcus.
Other Publications
  
PROJECT COMPOSITION
Study Synechococcus sp. WH8102
Analysis Projects Synechococcus sp. WH8102
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2-3kb inserts  
Number Of Reads
66550  
Read Size
  
Vector
pUC18  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000622
Organism Name
Synechococcus sp. WH8102  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Synechococcus  
Genus Synonyms
  
Species
Synechococcus sp. WH 8102  
Subspecies
  
Species Synonyms
  
Strain
WH8102  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCMP 2370  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 84588
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Synechococcales  
NCBI Family
Synechococcaceae  
NCBI Genus
Synechococcus  
NCBI Species
Synechococcus sp. WH 8102  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Pelagic  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 528814
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Coccus-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
1 - 2 um  
Cell Length
1 - 2 um  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Aquatic
Metabolisms
  
Phenotypes
  
Energy Sources Photosynthetic
Photoautotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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