PROJECT INFORMATION
GOLD Project ID
Gp0000620  
Project Name
Prochlorococcus marinus pastoris CCMP 1986  
Other Names
Prochlorococcus sp. MED4  
Legacy ER Project ID
10534  
Legacy GOLD ID
Gc00152  
NCBI BioProject Name Prochlorococcus marinus subsp. pastoris str. CCMP1986
NCBI BioProject ID 213
NCBI BioProject Accession PRJNA213
NCBI Locus Tag
PMM  
NCBI BioSample Accession SAMEA3138209
PI Robert Blankenship
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Ocean carbon cycle
Environmental
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Smallest and most abundant bacterium that has unique photosynthesizing components  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Wikipedia
Chisholm Lab
Entrez
Cyanosite
Database
  
Genome Publications Nature Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation.
Other Publications
  
PROJECT COMPOSITION
Study Prochlorococcus marinus subsp. pastoris CCMP1986
Analysis Projects Prochlorococcus marinus pastoris CCMP 1986
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2-3kb inserts  
Number Of Reads
27065  
Read Size
  
Vector
pUC18  
GC Percent
31  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000620
Organism Name
Prochlorococcus marinus pastoris CCMP 1986  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Prochlorococcus  
Genus Synonyms
  
Species
Prochlorococcus marinus  
Subspecies
pastoris  
Species Synonyms
  
Strain
CCMP 1986  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCMP 1986  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 59919
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Synechococcales  
NCBI Family
Prochloraceae  
NCBI Genus
Prochlorococcus  
NCBI Species
Prochlorococcus marinus  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Marginal Sea  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 527925
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Oval-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Aquatic
Metabolisms
  
Phenotypes High-light adapted
Energy Sources Photosynthetic

 

 

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