PROJECT INFORMATION | |
---|---|
GOLD Project ID
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Gp0000617
|
Project Name
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Niastella koreensis GR20-10, DSM 17620
|
Other Names
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|
Legacy ER Project ID
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15146
|
Legacy GOLD ID
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Gi04615, Gc02054
|
NCBI BioProject Name | Niastella koreensis GR20-10 |
NCBI BioProject ID
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42711 |
NCBI BioProject Accession
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PRJNA42711 |
NCBI Locus Tag
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Niako
|
NCBI BioSample Accession
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SAMN02232043 |
PI | Jonathan Eisen |
Added By |
Nikos Kyrpides
on 2009-08-03 |
Last Modified By |
Jon Bertsch
on 2014-04-08 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Tree of Life GEBA |
Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
|
Collaborating Institute
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Leibniz Institute
(Germany)
|
Funding Agency
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U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
Project Description
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Niastella koreensis GR20-10 Genome sequencing
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Portal Download | Raw Sequence Data |
Project Information
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Isolation |
Database
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|
Genome Publications
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|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
A Genomic Encyclopedia of Bacteria and Archaea (GEBA) |
Organism |
Niastella koreensis GR20-10 |
Analysis Projects |
Niastella koreensis GR20-10, DSM 17620 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Level 6: Finished |
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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454 GS FLX Titanium Illumina |
Library Method
(MIGS-28)
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|
Number Of Reads
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|
Read Size
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|
Vector
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|
GC Percent |
45
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
---|---|
GOLD Organism ID |
Go0000617 |
Organism Name |
Niastella koreensis GR20-10
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
BACTEROIDETES
|
Genus |
Niastella
|
Genus Synonyms |
|
Species |
Niastella koreensis
|
Subspecies |
|
Species Synonyms |
|
Strain |
GR20-10
|
Strain Synonyms |
|
Serovar-Biovar |
|
Culture Collection ID |
DSM 17620
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.10255
|
Exemplar Name |
Niastella koreensis
|
Taxon DOI |
10.1601/tx.10255
|
Biosafety Level |
1
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
700598 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Bacteroidetes
|
NCBI Class |
Chitinophagia
|
NCBI Order |
Chitinophagales
|
NCBI Family |
Chitinophagaceae
|
NCBI Genus |
Niastella
|
NCBI Species |
Niastella koreensis
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Environmental
|
Ecosystem Category |
Terrestrial
|
Ecosystem Type |
Soil
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Agricultural land
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
|
Genbank 16S ID |
DQ244077 |
GENERAL PROPERTIES | |
---|---|
Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Nonmotile
|
Sporulation |
|
Temperature Range |
Psychrophile
|
Temperature Optimum |
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
|
Known Habitats |
Soil |
Metabolisms |
|
Phenotypes |
|
Energy Sources |
|
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