| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0000617
|
|
Project Name
|
Niastella koreensis GR20-10, DSM 17620
|
|
Other Names
|
|
|
Legacy ER Project ID
|
15146
|
|
Legacy GOLD ID
|
Gi04615, Gc02054
|
| NCBI BioProject Name | Niastella koreensis GR20-10 |
|
NCBI BioProject ID
|
42711 |
|
NCBI BioProject Accession
|
PRJNA42711 |
|
NCBI Locus Tag
|
Niako
|
|
NCBI BioSample Accession
|
SAMN02232043 |
| PI | Jonathan Eisen |
| Added By |
Nikos Kyrpides
on 2009-08-03 |
| Last Modified By |
Jon Bertsch
on 2014-04-08 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Tree of Life GEBA |
|
Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
|
|
Collaborating Institute
|
Leibniz Institute
(Germany)
|
|
Funding Agency
|
U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
|
Project Description
|
Niastella koreensis GR20-10 Genome sequencing
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
| JGI Portal Download | Raw Sequence Data |
|
Project Information
|
Isolation |
|
Database
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
A Genomic Encyclopedia of Bacteria and Archaea (GEBA) |
| Organism |
Niastella koreensis GR20-10 |
| Analysis Projects |
Niastella koreensis GR20-10, DSM 17620 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
454 GS FLX Titanium Illumina |
|
Library Method
(MIGS-28)
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
45
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000617 |
| Organism Name |
Niastella koreensis GR20-10
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
BACTEROIDETES
|
| Genus |
Niastella
|
| Genus Synonyms |
|
| Species |
Niastella koreensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
GR20-10
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
DSM 17620
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.10255
|
| Exemplar Name |
Niastella koreensis
|
| Taxon DOI |
10.1601/tx.10255
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
700598 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Bacteroidetes
|
| NCBI Class |
Chitinophagia
|
| NCBI Order |
Chitinophagales
|
| NCBI Family |
Chitinophagaceae
|
| NCBI Genus |
Niastella
|
| NCBI Species |
Niastella koreensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Terrestrial
|
| Ecosystem Type |
Soil
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Agricultural land
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
DQ244077 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Nonmotile
|
| Sporulation |
|
| Temperature Range |
Psychrophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Soil |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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