| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0000610
|
|
Project Name
|
Photorhabdus laumondii TTO1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10527
|
|
Legacy GOLD ID
|
Gc00159
|
| NCBI BioProject Name | Photorhabdus laumondii TTO1 |
|
NCBI BioProject ID
|
9605 |
|
NCBI BioProject Accession
|
PRJNA9605 |
|
NCBI Locus Tag
|
plu
|
|
NCBI BioSample Accession
|
SAMEA3138334 |
| PI | Kunst F |
| Added By |
Nikos Kyrpides
on 2007-11-27 |
| Last Modified By |
Supratim Mukherjee
on 2018-06-20 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Insect Pathogen Biotechnological Medical |
|
Sequencing Center
|
Institut Pasteur
(France)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
Centre National de la Recherche Scientifique (CNRS)
(France)
Institut Pasteur (France) National Institute for Agricultural Research (INRA) (France) |
|
Project Description
|
A nematode-symbiotic organism that kills other insects
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
|
Wikipedia |
|
Database
|
|
|
Genome Publications
|
Nature biotechnology
The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens.
|
|
Other Publications
|
|
| PROJECT COMPOSITION | |
| Study |
Photorhabdus luminescens laumondii TTO1 |
| Analysis Projects |
Photorhabdus laumondii TTO1 |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Sequencing Comments
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
1?2 kb, 2?3 kb, 5-10kb inserts and BAC libraries of 50-90kb inserts
|
|
Number Of Reads
|
63475
|
|
Read Size
|
|
|
Vector
|
pcDNA-2.1, pSYX34, pBeloBAC11
|
| GC Percent |
43
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000610 |
| Organism Name |
Photorhabdus laumondii TTO1
|
| Other names (alias, synonyms, short names, common names) |
Photorhabdus luminescens laumondii TTO1
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Photorhabdus
|
| Genus Synonyms |
|
| Species |
Photorhabdus laumondii
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
TTO1
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
CCM 7076
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3260
|
| Exemplar Name |
Photorhabdus luminescens laumondii
|
| Taxon DOI |
10.1601/tx.3260
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
243265 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Morganellaceae
|
| NCBI Genus |
Photorhabdus
|
| NCBI Species |
Photorhabdus laumondii
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Animal
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
303432 |
| Genbank 16S ID |
AY278646 |
| Synonym List |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Temperature Optimum |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Symbiotic |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
Heterorhabditis bacteriophora
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
Septicemia Toxemia |
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
Heterotroph |
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