PROJECT INFORMATION
GOLD Project ID
Gp0000603  
Project Name
Rhodopseudomonas palustris CGA009  
Other Names
  
Legacy ER Project ID
10521  
Legacy GOLD ID
Gc00165  
NCBI BioProject Name Rhodopseudomonas palustris CGA009
NCBI BioProject ID 57
NCBI BioProject Accession PRJNA57
NCBI Locus Tag
RPA  
NCBI BioSample Accession SAMEA3138319
PI Robert Blankenship
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biotechnological
Energy production
Hydrogen production
Sequencing Center Institute of Molecular Genetics of the ASCR, v. v. i. (Czech Republic)
DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Metabolically diverse organism important in carbon cycle and bioremediation  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Nature biotechnology Complete genome sequence of the metabolically versatile photosynthetic bacterium Rhodopseudomonas palustris.
Other Publications
  
PROJECT COMPOSITION
Study Rhodopseudomonas palustris CGA009
Analysis Projects Rhodopseudomonas palustris CGA009
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2¿3 kb and 30kb fosmid inserts  
Number Of Reads
117810  
Read Size
  
Vector
pUC18, pFos1  
GC Percent
65  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0072558
Organism Name
Rhodopseudomonas palustris CGA009  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Rhodopseudomonas  
Genus Synonyms
  
Species
Rhodopseudomonas palustris  
Subspecies
  
Species Synonyms
  
Strain
CGA009  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-98  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 258594
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Rhodopseudomonas  
NCBI Species
Rhodopseudomonas palustris  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Lab synthesis  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 118953
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
25 - 35  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Soil
Fresh water
Metabolisms Pollutant degrader
Carbon dioxide fixation
Phenotypes
  
Energy Sources Phototroph

 

 

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