PROJECT NAME
GOLD Project ID
Gp0000591  
Project Name
Treponema denticola ATCC 35405  
Other Names
  
Legacy ER Project ID
10512  
Legacy GOLD ID
Gc00174  
NCBI BioProject Name Treponema denticola ATCC 35405
NCBI BioProject ID 4
NCBI BioProject Accession
PRJNA4  
NCBI Locus Tag
TDE  
NCBI BioSample Accession
SAMN02603967  
PI George Weinstock
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Dental Pathogen
Human Pathogen
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Baylor College of Medicine
Collaborating Institute University of Texas (USA)
Funding Agency National Institute of Dental and Craniofacial Research (USA)
Project Description
Causes periodontal disease, gum inflamation  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Treponema denticola ATCC 35405
Analysis Projects Treponema denticola ATCC 35405
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000591
Organism Name
Treponema denticola ATCC 35405  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
SPIROCHAETES  
Genus
Treponema  
Genus Synonyms
  
Species
Treponema denticola  
Subspecies
  
Species Synonyms
  
Strain
ATCC 35405  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 35405  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7862  
Exemplar Name
Treponema denticola  
Taxon DOI
10.1601/tx.7862  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 243275
NCBI Kingdom
  
NCBI Phylum
Spirochaetes  
NCBI Class
Spirochaetia  
NCBI Order
Spirochaetales  
NCBI Family
Spirochaetaceae  
NCBI Genus
Treponema  
NCBI Species
Treponema denticola  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 110659
Genbank 16S ID AF139203
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Spiral-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30 - 42  
Salinity
  
pH
6.5 - 8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Periodontal infection
Known Habitats Aquatic
Host
Hot spring
Human oral cavity
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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