PROJECT INFORMATION | |
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GOLD Project ID
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Gp0000585
|
Project Name
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Leptospira interrogans sv. Copenhageni Fiocruz L1-130
|
Other Names
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|
Legacy ER Project ID
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10506
|
Legacy GOLD ID
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Gc00180
|
NCBI BioProject Name | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 |
NCBI BioProject ID
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10687 |
NCBI BioProject Accession
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PRJNA10687 |
NCBI Locus Tag
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LIC
|
NCBI BioSample Accession
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SAMN02603847 |
PI | Nascimento, ALTO |
Added By |
Nikos Kyrpides
on 2007-11-27 |
Last Modified By |
JGI automated process
on 2014-03-26 |
Project Comments |
|
Project Status
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Complete and Published
|
Project Relevance
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Animal Pathogen Human Pathogen Medical |
Sequencing Center
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University of Sao Paulo
(Brazil)
University of Campinas (Spain) |
Collaborating Institute
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|
Funding Agency
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The Brazilian National Council for Scientific and Technological Development (CNPq)
(Brazil)
Sao Paulo Research Foundation (FAPESP) (Brazil) |
Project Description
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Causes leptospirosis
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
Project Information
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|
Database
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|
Genome Publications
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Journal of bacteriology
Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.
|
Other Publications
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|
PROJECT COMPOSITION | |
Study |
Leptospira interrogans sv Copenhageni Fiocruz L1-130 |
Organism |
Leptospira interrogans sv. Copenhageni Fiocruz L1-130 |
Analysis Projects |
Leptospira interrogans sv. Copenhageni Fiocruz L1-130 |
Number of Analysis Projects |
1 |
Number of DAPs |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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|
Sequencing Comments
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|
Sequencing Technology
(MIGS-29)
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|
Library Method
(MIGS-28)
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0.8-2.0 kb,2.0-4.5 kb and cosmid library
|
Number Of Reads
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|
Read Size
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|
Vector
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pUC18, Lawrist
|
GC Percent |
35
|
Chromosome Count |
2
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0000585 |
Organism Name |
Leptospira interrogans sv. Copenhageni Fiocruz L1-130
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
SPIROCHAETES
|
Genus |
Leptospira
|
Genus Synonyms |
|
Species |
Leptospira interrogans
|
Subspecies |
|
Species Synonyms |
|
Strain |
Fiocruz L1-130
|
Strain Synonyms |
|
Serovar-Biovar |
Copenhageni
|
Culture Collection ID |
|
Type Strain |
Unknown
|
Exemplar DOI |
|
Exemplar Name |
|
Taxon DOI |
|
Biosafety Level |
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
267671 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Spirochaetes
|
NCBI Class |
Spirochaetia
|
NCBI Order |
Leptospirales
|
NCBI Family |
Leptospiraceae
|
NCBI Genus |
Leptospira
|
NCBI Species |
Leptospira interrogans
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Human
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
692513 |
Genbank 16S ID |
|
GENERAL PROPERTIES | |
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Oxygen Requirement |
Aerobe
|
Cell Shape |
Spiral-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Temperature Optimum |
28 - 30
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
|
Symbiotic Relationship |
|
Symbiont Name |
|
Symbiont Taxon ID |
|
Cell Arrangements |
|
Diseases |
Leptospirosis |
Known Habitats |
Soil Host Fresh water |
Metabolisms |
|
Phenotypes |
Pathogen |
Energy Sources |
|
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