PROJECT NAME
GOLD Project ID
Gp0000579  
Project Name
Porphyromonas asaccharolytica VPI 4198, DSM 20707  
Other Names
  
Legacy ER Project ID
15142  
Legacy GOLD ID
Gi04610, Gc01748  
NCBI BioProject Name Porphyromonas asaccharolytica DSM 20707
NCBI BioProject ID 51745
NCBI BioProject Accession
PRJNA51745  
NCBI Locus Tag
Poras  
NCBI BioSample Accession
SAMN00713611  
PI Jonathan Eisen
Added By Nikos Kyrpides on 2009-08-03
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance GEBA
Tree of Life
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Leibniz Institute (Germany)
Funding Agency Leibniz Institute (Germany)
U.S. Department of Energy (DOE) (USA)
Project Description
Porphyromonas asaccharolytica DSM 20707 genome sequencing project.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information GEBA
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies A Genomic Encyclopedia of Bacteria and Archaea (GEBA)
Analysis Projects Porphyromonas asaccharolytica VPI 4198, DSM 20707
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000579
Organism Name
Porphyromonas asaccharolytica VPI 4198, DSM 20707  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Porphyromonas  
Genus Synonyms
  
Species
Porphyromonas asaccharolytica  
Subspecies
  
Species Synonyms
  
Strain
VPI 4198, DSM 20707  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 20707  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7935  
Exemplar Name
Porphyromonas asaccharolytica  
Taxon DOI
10.1601/tx.8021  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 879243
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Porphyromonadaceae  
NCBI Genus
Porphyromonas  
NCBI Species
Porphyromonas asaccharolytica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L16490
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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