PROJECT NAME
GOLD Project ID
Gp0000561  
Project Name
Pectobacterium atrosepticum SCRI1043  
Other Names
  
Legacy ER Project ID
10484  
Legacy GOLD ID
Gc00202  
NCBI BioProject Name Pectobacterium atrosepticum SCRI1043
NCBI BioProject ID 350
NCBI BioProject Accession
PRJNA350  
NCBI Locus Tag
ECA  
NCBI BioSample Accession
SAMEA1705920  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Plant Pathogen
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute University of Cambridge (United Kingdom)
Scottish Crop Research Institute (United Kingdom)
Funding Agency The Scottish Government (United Kingdom)
Project Description
Causative agent of soft rot and blackleg of potato  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Wikipedia
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Pectobacterium atrosepticum SCRI1043
Analysis Projects Pectobacterium atrosepticum SCRI1043
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2.2-2.5kb, 2.5- 4.0kb, 4.5-5.5kb and 12-23kb bac inserts   
Number Of Reads
161800  
Read Size
  
Vector
pUC18, pMAQ1b, pBACe3.6  
GC Percent
51  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000561
Organism Name
Pectobacterium atrosepticum SCRI1043  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pectobacterium  
Genus Synonyms
  
Species
Pectobacterium atrosepticum  
Subspecies
  
Species Synonyms
  
Strain
SCRI1043  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-672  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 218491
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Pectobacterium  
NCBI Species
Pectobacterium atrosepticum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 494319
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
27 - 30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Soft rot
Known Habitats Host
Metabolisms
  
Phenotypes Blackleg
Pathogen
Energy Sources
  

 

 

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