PROJECT INFORMATION
GOLD Project ID
Gp0000557  
Project Name
Leifsonia xyli xyli CTCB07  
Other Names
  
Legacy ER Project ID
10480  
Legacy GOLD ID
Gc00206  
NCBI BioProject Name Leifsonia xyli subsp. xyli str. CTCB07
NCBI BioProject ID 212
NCBI BioProject Accession PRJNA212
NCBI Locus Tag
Lxx  
NCBI BioSample Accession SAMN02603772
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Plant Pathogen
Agricultural
Sequencing Center University of Campinas (Spain)
Collaborating Institute
  
Funding Agency Sao Paulo Research Foundation (FAPESP) (Brazil)
Project Description
Causative agent of ratoon stunting disease in sugarcane.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Database
  
Genome Publications Molecular plant-microbe interactions : MPMI The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli.
Other Publications
  
PROJECT COMPOSITION
Study Leifsonia xyli xyli CTCB07
Analysis Projects Leifsonia xyli xyli CTCB07
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
Shotgun and cosmid insert libraries  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
68  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000557
Organism Name
Leifsonia xyli xyli CTCB07  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Leifsonia  
Genus Synonyms
  
Species
Leifsonia xyli  
Subspecies
xyli  
Species Synonyms
  
Strain
CTCB07  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 281090
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micrococcales  
NCBI Family
Microbacteriaceae  
NCBI Genus
Leifsonia  
NCBI Species
Leifsonia xyli  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
20 - 25C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Ratoon stunting
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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